Rh2AG264800

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000380
Physical Location & Seq
Forward (+)
30841889 .. 30843210
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG264800.1

Sequence Viewer

Length: 540 bp
ATGAGGATCAGGTTTCCTGAACGGGGGAGAAGTGGAAGATTTGTTGCAACACTTAAGAATCTGGAAGCTGGCTTTGGAGATAAGATGCTGTTTAGCAGAGCAAATCTCACAATTGAAAGAGGAGAGAAACTGGCCATTATTCACCCAAATGGATGTGGCAAGAGTACTTTGCTGAAACATGCTGAGGCACTTGATTTAAATAAAACAGTGCCTGAGACAATAGAAGTAGCAGCAGGGGATTGGAGACTTGATGATATAAAGGGCCTCCTTGGTTGTTGTAATTTCAAAGCTGATATGCTTGATGGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAACTCGAGCGTGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCAAAAAGCAAAGGCAAAATCGAAAGGAATTACAAAGAACGCTGAGAGATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

9.64

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 33 - 64 7.5e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 2 cut(s) 166, 338
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 2 cut(s) 53, 319
AgsI TTSAA 2 cut(s) 116, 286
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 68, 290, 455
AluI AGCT 3 cut(s) 68, 290, 455
Alw26I GTCTC 2 cut(s) 209, 238
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 2 cut(s) 132, 262
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 134, 341
AvaI CYCGRG 1 cut(s) 377
BalI TGGCCA 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 296, 525
BcoDI GTCTC 2 cut(s) 209, 238
BfaI CTAG 3 cut(s) 344, 356, 363
BfrI CTTAAG 2 cut(s) 53, 319
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 2 cut(s) 166, 338
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 408
BmsI GCATC 3 cut(s) 75, 349, 462
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu10I CCTNAGC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 3 cut(s) 174, 204, 516
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 135, 413
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 134, 264
BsiHKCI CYCGRG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 209, 238
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 134, 264
BsoBI CYCGRG 1 cut(s) 377
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 2 cut(s) 134, 264
BspCNI CTCAG 3 cut(s) 175, 205, 517
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 14
BspTI CTTAAG 2 cut(s) 53, 319
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 208
BstAFI CTTAAG 2 cut(s) 53, 319
BstAPI GCANNNNNTGC 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 70, 477
BstDEI CTNAG 4 cut(s) 183, 213, 438, 525
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 209, 238
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 134, 264
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 70, 477
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 165, 337
CviAII CATG 1 cut(s) 179
CviJI RGCY 9 cut(s) 68, 72, 134, 264, 290, 407, 422, 443, 455
CviKI_1 RGCY 9 cut(s) 68, 72, 134, 264, 290, 407, 422, 443, 455
CviQI GTAC 2 cut(s) 165, 337
DdeI CTNAG 4 cut(s) 183, 213, 438, 525
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 180, 257, 296
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 3 cut(s) 344, 356, 363
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 134, 264
Hin1II CATG 1 cut(s) 182
HinfI GANTC 2 cut(s) 58, 352
HphI GGTGA 2 cut(s) 134, 341
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 4 cut(s) 17, 62, 344, 356
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 47, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 4 cut(s) 183, 213, 438, 525
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 7 cut(s) 30, 47, 54, 116, 219, 225, 461
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 3 cut(s) 75, 349, 462
MaeI CTAG 3 cut(s) 344, 356, 363
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 48, 361, 472
MfeI CAATTG 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 111, 280, 510, 535
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 6 cut(s) 113, 178, 275, 326, 379, 391
Mox20I TGGCCA 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 134
MseI TTAA 4 cut(s) 54, 197, 320, 538
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 134
MspCI CTTAAG 2 cut(s) 53, 319
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 472
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 408
NspI RCATGY 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 377
PctI GAATGC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 58, 352
PkrI GCNGC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 262
PspXI VCTCGAGB 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 166, 338
RsaNI GTAC 2 cut(s) 165, 337
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 4 cut(s) 54, 197, 320, 538
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 2 cut(s) 166, 338
SetI ASST 5 cut(s) 14, 70, 292, 312, 457
SfaNI GCATC 3 cut(s) 75, 349, 462
Sfr274I CTCGAG 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 377
SmiI ATTTAAAT 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 3 cut(s) 53, 319, 377
SmoI CTYRAG 3 cut(s) 53, 319, 377
Sse9I AATT 4 cut(s) 111, 280, 510, 535
SspMI CTAG 3 cut(s) 344, 356, 363
StyI CCWWGG 1 cut(s) 268
SwaI ATTTAAAT 1 cut(s) 198
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 378, 503
TasI AATT 4 cut(s) 111, 280, 510, 535
TatI WGTACW 2 cut(s) 164, 336
TfiI GAWTC 2 cut(s) 58, 352
Tru1I TTAA 4 cut(s) 54, 197, 320, 538
Tru9I TTAA 4 cut(s) 54, 197, 320, 538
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 230
TspRI CASTG 1 cut(s) 213
Vha464I CTTAAG 2 cut(s) 53, 319
XbaI TCTAGA 2 cut(s) 343, 355
XceI RCATGY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 3 cut(s) 344, 356, 363
ZrmI AGTACT 2 cut(s) 166, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.