RLG00000018340

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000380
Physical Location & Seq
Forward (+)
28494050 .. 28495007
958 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018340

Sequence Viewer

Length: 525 bp
ATGTCGCAATCTCACGGCACTTCCGGAGTTGATAAACTTCACATTCCTCGAGCAACTATACATCGTAGAATGCTCCAAATTGTCGGCTTTGCCACAAGGGTTGCATTGCCTTACTTAGTTGAGAGGATTGAAGATTCAAGGGTCAGAGGAAGAAGAGGGTCGCTAGCTACAAGGTGTACACCGTGTAGGGAAGCTGAAAGAGACTCTCAGGAAGAGCTAATATGGATTGCTTTTAAGGAGGAGATGCAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGTCGTTGGAGAGTGCTGTGGGGGATATGGACTTGATGGGGAGGCTTTTGGATGAGCTTGATAAGCTTCAGAATCGGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCGAAGATTAGTGACTTGATGCAGGAGCTTGGGTATGCACCGGAGGATGGGGATAGGTTGGTGGCTTCGTTTAGCAGTGGTTGGCAGATGAGGATGTCACTTGGAAGATTAATGAATGTCAATTGCTTGGTAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

175

Amino Acids

19.81

Weight (kDa)

5.97

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 131, 138
AluBI AGCT 7 cut(s) 167, 194, 217, 334, 343, 412, 520
AluI AGCT 7 cut(s) 167, 194, 217, 334, 343, 412, 520
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 23
AseI ATTAAT 1 cut(s) 494
AspLEI GCGC 1 cut(s) 358
AsuNHI GCTAGC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 48
BccI CCATC 2 cut(s) 307, 425
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 48
BmsI GCATC 3 cut(s) 234, 373, 393
BmtI GCTAGC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 23, 424
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 4 cut(s) 334, 388, 436, 483
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 24, 425
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 220
BspEI TCCGGA 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 148, 207
BstAUI TGTACA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 115, 207
BstF5I GGATG 4 cut(s) 334, 388, 436, 483
BstHHI GCGC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 340
BtsCI GGATG 4 cut(s) 334, 388, 436, 483
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 115, 207
Eam1104I CTCTTC 2 cut(s) 148, 207
EarI CTCTTC 2 cut(s) 148, 207
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 48
FaiI YATR 5 cut(s) 59, 223, 305, 377, 420
FokI GGATG 4 cut(s) 341, 395, 443, 490
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 284
HapII CCGG 2 cut(s) 24, 425
HhaI GCGC 1 cut(s) 358
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 3 cut(s) 134, 203, 349
HpaII CCGG 2 cut(s) 24, 425
Hpy166II GTNNAC 2 cut(s) 177, 179
Hpy188I TCNGA 3 cut(s) 146, 256, 348
Hpy188III TCNNGA 2 cut(s) 24, 209
Hpy8I GTNNAC 2 cut(s) 177, 179
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 5 cut(s) 104, 247, 274, 406, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 115, 207
HspAI GCGC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 23
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 78, 409
LpnPI CCDG 7 cut(s) 37, 194, 233, 248, 344, 392, 438
LweI GCATC 3 cut(s) 234, 373, 393
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 365, 395, 480
MboII GAAGA 6 cut(s) 143, 162, 165, 224, 400, 501
MfeI CAATTG 1 cut(s) 505
MluCI AATT 2 cut(s) 78, 505
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 264
MroI TCCGGA 1 cut(s) 23
MseI TTAA 2 cut(s) 234, 494
MspI CCGG 2 cut(s) 24, 425
MunI CAATTG 1 cut(s) 505
Mva1269I GAATGC 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 340
NheI GCTAGC 1 cut(s) 163
NmuCI GTSAC 3 cut(s) 365, 395, 480
PaeR7I CTCGAG 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 207
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 134, 349
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 494
PspXI VCTCGAGB 1 cut(s) 48
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 234, 494
SchI GAGTC 1 cut(s) 197
SfaNI GCATC 3 cut(s) 234, 373, 393
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 48, 370
SmoI CTYRAG 2 cut(s) 48, 370
Sse9I AATT 2 cut(s) 78, 505
SspMI CTAG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 78, 505
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 134, 349
Tru1I TTAA 2 cut(s) 234, 494
Tru9I TTAA 2 cut(s) 234, 494
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 3 cut(s) 365, 395, 480
Tsp45I GTSAC 3 cut(s) 365, 395, 480
TspDTI ATGAA 1 cut(s) 512
TspRI CASTG 1 cut(s) 466
VspI ATTAAT 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 48
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.