Rmu_sc0020362.1_g000002

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020362.1
OG0000380
Physical Location & Seq
Reverse (-)
2672 .. 3986
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020362.1_g000002.1.cds

Sequence Viewer

Length: 552 bp
ctggagaaacttcaagaagaggatcttgttgaaaggccgttccagaggaaacagatgaggatcaggtttcctgaatggggaagaagtggaagatttgttgcaacacttaagaatctggaagctggctttggagatgaggtgctgtttagcagagcaaatctcacaactgaaagagcagagaaactggccattattggcccaaatggatgtggcaagagtactttgctgaaactaataatgggtttacaaaagccaatggcaggggaagttctgcttggggagcataatgtcctaacaaacttttttgagcaaaatcaggctgaggcacttgatttaaataaagcagtgcctgagacagtagaagaagcagcaggggattggagacttgatgatataaagggcctccttggttgttgtaatttcaaagcagatatgcttgatagaaaggtttccctcttaagtggtggtgagaagtttgtctcccttttgttgggcacgccttgctttctgcaagttcatggtaaagccatctactctgctagttctggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

5.82

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 30, 68
AcoI YGGCCR 1 cut(s) 186
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 77, 260, 490
AflII CTTAAG 2 cut(s) 107, 457
AgsI TTSAA 3 cut(s) 14, 32, 424
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 143, 258, 290
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 3 cut(s) 347, 376, 484
AlwI GGATC 2 cut(s) 30, 68
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 4 cut(s) 35, 186, 196, 400
ApeKI GCWGC 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 197, 400
AsuHPI GGTGA 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 380
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 347, 376, 484
BfaI CTAG 1 cut(s) 540
BfrI CTTAAG 2 cut(s) 107, 457
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 197, 400
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 260, 490
Bse1I ACTGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 77, 260, 490
BseMII CTCAG 2 cut(s) 312, 342
BseNI ACTGG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 4 cut(s) 37, 188, 198, 402
BslI CCNNNNNNNGG 3 cut(s) 77, 260, 490
BsmAI GTCTC 3 cut(s) 347, 376, 484
BsnI GGCC 4 cut(s) 37, 188, 198, 402
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 2 cut(s) 22, 60
BspANI GGCC 4 cut(s) 37, 188, 198, 402
BspCNI CTCAG 2 cut(s) 313, 343
BspPI GGATC 2 cut(s) 30, 68
BspTI CTTAAG 2 cut(s) 107, 457
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 22, 60
BssT1I CCWWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 12
BstAFI CTTAAG 2 cut(s) 107, 457
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 124, 497
BstDEI CTNAG 2 cut(s) 321, 351
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 2 cut(s) 25, 63
BstMAI GTCTC 3 cut(s) 347, 376, 484
BstMBI GATC 2 cut(s) 22, 60
BstMWI GCNNNNNNNGC 2 cut(s) 280, 501
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 4 cut(s) 37, 188, 198, 402
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 124, 497
CaiI CAGNNNCTG 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 197, 400
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 518
CviJI RGCY 9 cut(s) 37, 122, 126, 188, 198, 253, 320, 402, 527
CviKI_1 RGCY 9 cut(s) 37, 122, 126, 188, 198, 253, 320, 402, 527
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 321, 351
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
DraI TTTAAA 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 1 cut(s) 521
FaiI YATR 4 cut(s) 285, 395, 434, 519
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 258, 290
FatI CATG 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 540
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 4 cut(s) 37, 188, 198, 402
Hin1II CATG 1 cut(s) 521
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 245
Hpy188III TCNNGA 5 cut(s) 14, 43, 71, 116, 546
Hpy8I GTNNAC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 101, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 501
HpyF3I CTNAG 2 cut(s) 321, 351
Hsp92II CATG 1 cut(s) 521
Kzo9I GATC 2 cut(s) 22, 60
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 380
MaeI CTAG 1 cut(s) 540
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 4 cut(s) 29, 93, 102, 374
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 7 cut(s) 13, 39, 51, 130, 316, 413, 464
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 448
MscI TGGCCA 1 cut(s) 188
MseI TTAA 3 cut(s) 108, 335, 458
Msp20I TGGCCA 1 cut(s) 188
MspCI CTTAAG 2 cut(s) 107, 457
MwoI GCNNNNNNNGC 2 cut(s) 280, 501
NdeII GATC 2 cut(s) 22, 60
NlaIII CATG 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 370
PspPI GGNCC 2 cut(s) 197, 400
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 108, 335, 458
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 22, 60
Sau96I GGNCC 2 cut(s) 197, 400
ScaI AGTACT 1 cut(s) 220
SduI GDGCHC 1 cut(s) 497
SetI ASST 4 cut(s) 68, 124, 141, 450
SmiI ATTTAAAT 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 107, 457
SmoI CTYRAG 2 cut(s) 107, 457
Sse9I AATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 406
SwaI ATTTAAAT 1 cut(s) 336
TaaI ACNGT 1 cut(s) 358
TasI AATT 1 cut(s) 418
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 3 cut(s) 108, 335, 458
Tru9I TTAA 3 cut(s) 108, 335, 458
TscAI CASTG 1 cut(s) 351
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 1 cut(s) 351
Vha464I CTTAAG 2 cut(s) 107, 457
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.