Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026531.1

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Forward (+)

16743 .. 17254

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026531.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgggcagtgaggtggccctacaacaatccgactaccaggccgtcaaaataccatcatgccacaccgttgctggtccccgcagctggttctatggcggctacgtttgtgtgccctttggatatcatcaagacctgcaggttgtgtacaggtccatggcatgccttctggtcaaagaggcagtactgcagtatcatttcacgagcctacagaacatattaaagacagaaggtcttaggggattgtatttcatagtttatgaacaactcaagggtctactccagtcacacgaggatggcggggaactcacaattctaggaaatatgatagctgctactggtgctggggttgccacaaccatttcaacaaatccattgtgggtggttaagacaagactgcaaacacaaggaatgaggcctggttccatacaaaagcatgagatccgctttgacaaggatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

7.75

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	127, 141
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	4 cut(s)	79, 96, 297, 442
AclWI	GGATC	1 cut(s)	433
AfaI	GTAC	2 cut(s)	146, 183
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	363
AhdI	GACNNNNNGTC	1 cut(s)	228
AjnI	CCWGG	2 cut(s)	36, 415
AluBI	AGCT	2 cut(s)	84, 329
AluI	AGCT	2 cut(s)	84, 329
AlwI	GGATC	1 cut(s)	433
AoxI	GGCC	3 cut(s)	15, 39, 413
ApeKI	GCWGC	2 cut(s)	81, 329
AspS9I	GGNCC	3 cut(s)	16, 74, 150
AvaII	GGWCC	2 cut(s)	74, 150
BaeGI	GKGCMC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BauI	CACGAG	2 cut(s)	199, 287
BbvI	GCAGC	2 cut(s)	93, 316
BccI	CCATC	2 cut(s)	61, 287
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	38, 417
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	3 cut(s)	134, 185, 206
BfuAI	ACCTGC	2 cut(s)	127, 141
BisI	GCNGC	3 cut(s)	82, 97, 330
BlsI	GCNGC	3 cut(s)	83, 98, 331
BmcAI	AGTACT	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	38, 417
Bme18I	GGWCC	2 cut(s)	74, 150
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	16, 74, 150
BmiI	GGNNCC	2 cut(s)	76, 421
BmrFI	CCNGG	2 cut(s)	38, 417
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	280, 340
BseBI	CCWGG	2 cut(s)	38, 417
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	280, 340
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	93, 316
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	3 cut(s)	17, 41, 415
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	17, 41, 415
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	4 cut(s)	79, 96, 297, 442
BspANI	GGCC	3 cut(s)	17, 41, 415
BspLI	GGNNCC	2 cut(s)	76, 421
BspMAI	CTGCAG	2 cut(s)	138, 189
BspMI	ACCTGC	2 cut(s)	127, 141
BspPI	GGATC	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	280, 340
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	438
BssSI	CACGAG	2 cut(s)	199, 287
BssT1I	CCWWGG	1 cut(s)	153
Bst2BI	CACGAG	2 cut(s)	199, 287
Bst2UI	CCWGG	2 cut(s)	38, 417
Bst4CI	ACNGT	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 347
BstNI	CCWGG	2 cut(s)	38, 417
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	36, 415
BstSFI	CTRYAG	3 cut(s)	134, 185, 206
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	93, 316
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	17, 41, 415
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	2 cut(s)	127, 141
Cac8I	GCNNGC	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	16, 74, 150
Csp6I	GTAC	2 cut(s)	145, 182
CviAII	CATG	4 cut(s)	57, 154, 159, 434
CviJI	RGCY	7 cut(s)	17, 41, 84, 99, 204, 329, 415
CviKI_1	RGCY	7 cut(s)	17, 41, 84, 99, 204, 329, 415
CviQI	GTAC	2 cut(s)	145, 182
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	74, 150
EcoRII	CCWGG	2 cut(s)	36, 415
EcoRV	GATATC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	60, 157, 162, 437
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	56, 153, 158, 433
FauI	CCCGC	2 cut(s)	86, 290
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	82, 97, 330
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	82, 97, 330
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	3 cut(s)	82, 97, 330
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	17, 41, 415
Hin1II	CATG	4 cut(s)	60, 157, 162, 437
Hpy166II	GTNNAC	2 cut(s)	145, 275
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	128, 199
Hpy8I	GTNNAC	2 cut(s)	145, 275
HpyAV	CCTTC	2 cut(s)	173, 221
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	136, 187, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 347
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	60, 157, 162, 437
Kzo9I	GATC	1 cut(s)	438
Lsp1109I	GCAGC	2 cut(s)	93, 316
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	4, 169, 283, 405
MseI	TTAA	2 cut(s)	218, 384
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	38, 417
MvaI	CCWGG	2 cut(s)	38, 417
MwoI	GCNNNNNNNGC	2 cut(s)	338, 347
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	4 cut(s)	60, 157, 162, 437
NlaIV	GGNNCC	2 cut(s)	76, 421
NmuCI	GTSAC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	162
PaeI	GCATGC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	83, 98, 331
Psp6I	CCWGG	2 cut(s)	36, 415
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	36, 415
PspN4I	GGNNCC	2 cut(s)	76, 421
PspPI	GGNCC	3 cut(s)	16, 74, 150
PstI	CTGCAG	2 cut(s)	138, 189
PsuI	RGATCY	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	2 cut(s)	146, 183
RsaNI	GTAC	2 cut(s)	145, 182
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	218, 384
SatI	GCNGC	3 cut(s)	82, 97, 330
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	3 cut(s)	16, 74, 150
SbfI	CCTGCAGG	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	38, 417
SdaI	CCTGCAGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	15, 86, 105, 135, 141, 152, 232, 331
SfcI	CTRYAG	3 cut(s)	134, 185, 206
SinI	GGWCC	2 cut(s)	74, 150
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	162
Sse8387I	CCTGCAGG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	4 cut(s)	79, 96, 297, 442
SspMI	CTAG	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	36, 415
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	105
TasI	AATT	1 cut(s)	309
TatI	WGTACW	2 cut(s)	144, 181
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	218, 384
Tru9I	TTAA	2 cut(s)	218, 384
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	2 cut(s)	81, 329
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	238, 273
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	74, 150
XceI	RCATGY	1 cut(s)	162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.