RchiOBHm_Chr7g0224491

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
46665113 .. 46665767
655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20102

Sequence Viewer

Length: 513 bp
ATGTGGAGGGAAGCTAAAAGGGACTCTCAAGAAGAGCTAATATGGACTGCTTTTATGGAGGAGATGGAGGTGTCAGAGAGGCTAGAGAGGGTGCAAAAGGCGTTGGAGAATGCTGTGGAGGATATGGACTTGATGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGAAGCAGGAGTGTGACTTGAGTAATGTGGATTCCAACATTAATAAGTTGATGCCGGAACTTGGGTTTGCACTTGAGGATGAAGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATAAGGATGTCACTTGGGAAGATTTTGCTTCAGAAAATTTGTCATGGTGAATTGTTATTAGTGGTTAACAAGGAAATTGCTTGCTTGTTTCTGATTAGGGAGATGCTATTTCAAGTAATATTTGGTTCTTTAGCCATAAGATACATGCTTAATCTGAAGCTGGTTACTCTAAATAGCAGTGTTATCATGATTGCATTTGGGCTACCTTCTTATTATTTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

4.78

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 3 cut(s) 149, 305, 467
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 404
AluBI AGCT 5 cut(s) 14, 37, 154, 163, 451
AluI AGCT 5 cut(s) 14, 37, 154, 163, 451
ApoI RAATTY 1 cut(s) 327
AseI ATTAAT 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 148, 350
BccI CCATC 2 cut(s) 58, 127
BfaI CTAG 1 cut(s) 83
BmsI GCATC 2 cut(s) 213, 384
BpuEI CTTGAG 3 cut(s) 12, 211, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 233
BseGI GGATG 3 cut(s) 154, 256, 303
BseLI CCNNNNNNNGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 115
BspHI TCATGA 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 373
BstF5I GGATG 3 cut(s) 154, 256, 303
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 439
BtsCI GGATG 3 cut(s) 154, 256, 303
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 373
CciI TCATGA 1 cut(s) 477
CviAII CATG 3 cut(s) 335, 436, 478
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco57I CTGAAG 3 cut(s) 149, 305, 467
FaeI CATG 3 cut(s) 338, 439, 481
FaiI YATR 7 cut(s) 43, 56, 125, 336, 428, 437, 479
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 334, 435, 477
FokI GGATG 3 cut(s) 161, 263, 310
FspBI CTAG 1 cut(s) 83
HapII CCGG 1 cut(s) 227
Hin1II CATG 3 cut(s) 338, 439, 481
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 23, 169, 203
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 148, 350
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 6 cut(s) 76, 168, 174, 324, 384, 447
Hpy188III TCNNGA 2 cut(s) 29, 478
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 507
HpyCH4V TGCA 3 cut(s) 94, 242, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 338, 439, 481
KspAI GTTAAC 1 cut(s) 358
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 164, 240, 437
LweI GCATC 2 cut(s) 213, 384
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 185, 300, 454
MboII GAAGA 3 cut(s) 44, 266, 322
MluCI AATT 3 cut(s) 327, 341, 366
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 84, 231
MnlI CCTC 7 cut(s) 52, 61, 72, 81, 112, 132, 241
MseI TTAA 4 cut(s) 213, 357, 441, 511
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 160
NlaIII CATG 3 cut(s) 338, 439, 481
NmuCI GTSAC 2 cut(s) 185, 300
NspI RCATGY 1 cut(s) 439
PagI TCATGA 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 169, 203
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PshBI ATTAAT 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 213, 357, 441, 511
SchI GAGTC 1 cut(s) 17
SetI ASST 8 cut(s) 16, 39, 72, 156, 165, 263, 453, 499
SfaNI GCATC 2 cut(s) 213, 384
SmlI CTYRAG 3 cut(s) 27, 190, 245
SmoI CTYRAG 3 cut(s) 27, 190, 245
Sse9I AATT 3 cut(s) 327, 341, 366
SspI AATATT 1 cut(s) 411
SspMI CTAG 1 cut(s) 83
TasI AATT 3 cut(s) 327, 341, 366
TfiI GAWTC 2 cut(s) 169, 203
Tru1I TTAA 4 cut(s) 213, 357, 441, 511
Tru9I TTAA 4 cut(s) 213, 357, 441, 511
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 185, 300
Tsp45I GTSAC 2 cut(s) 185, 300
TspDTI ATGAA 2 cut(s) 261, 267
TspRI CASTG 1 cut(s) 475
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 439
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.