Rh3AG071300

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000380
Physical Location & Seq
Forward (+)
5493282 .. 5495642
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG071300.1

Sequence Viewer

Length: 453 bp
ATGGTTACCTCATCTCTATTTGGATATGGAGATCTGGAGATGTATCCCTGCTGGGTTTGGAATCAGGTCAAAGGAAGAAGATGGTTGCTAGCTACAAGGTGTACACTATGGAGGGAAGCTGAAAGGGAGTCTCAGGAAGAGCTAATATGGACTGCTTTTAAGGAGGAGATGGAGGTGTCAGAGAGGCTGGAGAGGGTACAAAAGGCGTTAGAGAATGCTGTGGAGGATATGGACTTGATGGTAAGGCTTTTGGATGAGCTTGGTAAGCTTCAAAATCAGGCGCAGGAGTGTGACTTTAGTATGGTGGATGCCAACATTAGTAAGTTGATGTCAGAACTTGGGTTTGCGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTTCTTCAGCTGTTGGTCAGAGCCTACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

150

Amino Acids

17.65

Weight (kDa)

4.62

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 103, 198
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 6 cut(s) 92, 119, 142, 259, 268, 430
AluI AGCT 6 cut(s) 92, 119, 142, 259, 268, 430
Alw26I GTCTC 1 cut(s) 135
AspLEI GCGC 2 cut(s) 283, 349
AsuNHI GCTAGC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 351
BccI CCATC 3 cut(s) 75, 163, 232
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 54
BglII AGATCT 1 cut(s) 31
BmsI GCATC 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 92
BpmI CTGGAG 2 cut(s) 56, 209
Bse21I CCTNAGG 1 cut(s) 351
BseGI GGATG 4 cut(s) 259, 313, 361, 408
BseMII CTCAG 2 cut(s) 146, 342
BseRI GAGGAG 1 cut(s) 179
BseYI CCCAGC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 145, 343
BspOI GCTAGC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 101
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 132, 351
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 4 cut(s) 259, 313, 361, 408
BstHHI GCGC 2 cut(s) 283, 349
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstPI GGTNACC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu36I CCTNAGG 1 cut(s) 351
BsuI GTATCC 1 cut(s) 54
BtsCI GGATG 4 cut(s) 259, 313, 361, 408
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 283, 349
Csp6I GTAC 2 cut(s) 102, 197
CviQI GTAC 2 cut(s) 102, 197
DdeI CTNAG 2 cut(s) 132, 351
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaiI YATR 5 cut(s) 27, 109, 148, 230, 302
FokI GGATG 4 cut(s) 266, 320, 368, 415
FspBI CTAG 1 cut(s) 89
GlaI GCGC 2 cut(s) 282, 348
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 56, 209
HhaI GCGC 2 cut(s) 283, 349
Hin6I GCGC 2 cut(s) 281, 347
HinP1I GCGC 2 cut(s) 281, 347
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 61, 128
Hpy166II GTNNAC 2 cut(s) 102, 104
Hpy188I TCNGA 3 cut(s) 181, 334, 440
Hpy188III TCNNGA 2 cut(s) 35, 134
Hpy8I GTNNAC 2 cut(s) 102, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 2 cut(s) 132, 351
HspAI GCGC 2 cut(s) 281, 347
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 9 cut(s) 20, 37, 50, 61, 119, 173, 263, 269, 363
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 4, 290, 405
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 5 cut(s) 87, 90, 149, 416, 427
MflI RGATCY 1 cut(s) 31
MlyI GAGTC 1 cut(s) 137
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 430
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 1 cut(s) 31
NheI GCTAGC 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 290, 405
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 61
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 103, 198
RsaNI GTAC 2 cut(s) 102, 197
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 137
SfaNI GCATC 1 cut(s) 298
SspMI CTAG 1 cut(s) 89
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 2 cut(s) 290, 405
Tsp45I GTSAC 2 cut(s) 290, 405
TspDTI ATGAA 1 cut(s) 366
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.