Rh2AG264200

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000380
Physical Location & Seq
Forward (+)
30673767 .. 30687776
14010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG264200.1

Sequence Viewer

Length: 585 bp
ATGAGGATCAGGTTTCCTGAACGGGGAAGAAGTGGAAGATTTGTTGCAACACTTAAGAATCTGGAAGCTGGCTTTGGAGATAAGGTGCTGTTTAGCAGAGCAAATCTCACAATTGAAAGAGGAGAGAAACTGGCCATTATTGGCCCAAATGGATGTGGCAAGAGTACTTTGCTGAAACTAATAATGGGTTTACAAAAGCCAATGGCAGGTGAAGTTCTGCTTGGGGAGCATAATGTCCTAACAAACTTTTTTGAGCAAAATCAGGCTGAGGCACTTATTGATTTAAATAAAACAATGCCTGAGACAGTAGAAGAAGCAGCAGAGGATTGGAGACTTGATGATATTAAGGGCCTCCTTGGTTGTTGTAATTTCAAAGCAGATATGCTTGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGGAGGCAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTAGTGGAAGTTAAAGACAGAAGATTGCAAGATTATGCAGGCAATTACAATGTTAGTCTGTACTGTCAGCTTACTTGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

194

Amino Acids

21.84

Weight (kDa)

7.63

Isoelectric Point (pI)

18.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 33 - 143 1.3e-19 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 3 cut(s) 166, 440, 563
AfiI CCNNNNNNNGG 2 cut(s) 23, 206
AflII CTTAAG 2 cut(s) 53, 406
AgsI TTSAA 2 cut(s) 116, 373
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 204, 236
AluBI AGCT 2 cut(s) 68, 571
AluI AGCT 2 cut(s) 68, 571
Alw26I GTCTC 2 cut(s) 296, 325
AlwI GGATC 1 cut(s) 14
AoxI GGCC 4 cut(s) 132, 142, 349, 579
ApeKI GCWGC 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 397
AspS9I GGNCC 3 cut(s) 143, 349, 579
AsuHPI GGTGA 2 cut(s) 221, 428
BalI TGGCCA 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 329
BcoDI GTCTC 2 cut(s) 296, 325
BfrI CTTAAG 2 cut(s) 53, 406
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 143, 349, 579
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 206
Bse1I ACTGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 23, 206
BseMII CTCAG 2 cut(s) 258, 291
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 4 cut(s) 134, 144, 351, 581
BslI CCNNNNNNNGG 2 cut(s) 23, 206
BsmAI GTCTC 2 cut(s) 296, 325
BsnI GGCC 4 cut(s) 134, 144, 351, 581
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 4 cut(s) 134, 144, 351, 581
BspCNI CTCAG 2 cut(s) 259, 292
BspHI TCATGA 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 1 cut(s) 14
BspTI CTTAAG 2 cut(s) 53, 406
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 4 cut(s) 307, 451, 460, 566
BstAFI CTTAAG 2 cut(s) 53, 406
BstC8I GCNNGC 2 cut(s) 70, 541
BstDEI CTNAG 2 cut(s) 267, 300
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 296, 325
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 4 cut(s) 134, 144, 351, 581
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 70, 541
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 143, 349, 579
Csp6I GTAC 3 cut(s) 165, 439, 562
CviAII CATG 1 cut(s) 467
CviJI RGCY 9 cut(s) 68, 72, 134, 144, 199, 266, 351, 571, 581
CviKI_1 RGCY 9 cut(s) 68, 72, 134, 144, 199, 266, 351, 571, 581
CviQI GTAC 3 cut(s) 165, 439, 562
DdeI CTNAG 2 cut(s) 267, 300
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 470
FaiI YATR 5 cut(s) 231, 383, 468, 482, 537
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 4 cut(s) 134, 144, 351, 581
Hin1II CATG 1 cut(s) 470
HinfI GANTC 1 cut(s) 58
HphI GGTGA 2 cut(s) 221, 428
Hpy166II GTNNAC 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 17, 62, 467
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 4 cut(s) 307, 451, 460, 566
HpyCH4V TGCA 3 cut(s) 47, 529, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 267, 300
Hsp92II CATG 1 cut(s) 470
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 30, 47, 54, 116, 192, 248, 312, 525
Lsp1109I GCAGC 1 cut(s) 329
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 39, 48, 323, 534
MfeI CAATTG 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 3 cut(s) 111, 367, 544
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 6 cut(s) 113, 262, 316, 362, 413, 418
Mox20I TGGCCA 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 134
MseI TTAA 6 cut(s) 54, 284, 345, 407, 495, 513
Msp20I TGGCCA 1 cut(s) 134
MspCI CTTAAG 2 cut(s) 53, 406
MunI CAATTG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 470
PagI TCATGA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 482
PspPI GGNCC 3 cut(s) 143, 349, 579
RsaI GTAC 3 cut(s) 166, 440, 563
RsaNI GTAC 3 cut(s) 165, 439, 562
SaqAI TTAA 6 cut(s) 54, 284, 345, 407, 495, 513
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 3 cut(s) 143, 349, 579
ScaI AGTACT 1 cut(s) 166
SetI ASST 6 cut(s) 14, 70, 87, 211, 399, 573
SmiI ATTTAAAT 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 53, 406
SmoI CTYRAG 2 cut(s) 53, 406
Sse9I AATT 3 cut(s) 111, 367, 544
StyI CCWWGG 1 cut(s) 355
SwaI ATTTAAAT 1 cut(s) 285
TaaI ACNGT 4 cut(s) 307, 451, 460, 566
TaqII GACCGA 1 cut(s) 486
TasI AATT 3 cut(s) 111, 367, 544
TatI WGTACW 3 cut(s) 164, 438, 561
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 6 cut(s) 54, 284, 345, 407, 495, 513
Tru9I TTAA 6 cut(s) 54, 284, 345, 407, 495, 513
TscAI CASTG 1 cut(s) 454
TseI GCWGC 1 cut(s) 317
TspRI CASTG 1 cut(s) 454
Vha464I CTTAAG 2 cut(s) 53, 406
XmnI GAANNNNTTC 1 cut(s) 397
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.