Rh2BG275300

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000380
Physical Location & Seq
Forward (+)
29925316 .. 29926351
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG275300.1

Sequence Viewer

Length: 372 bp
ATGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACTGACAAATCGCTTGGACATTCCTTCAAAAGAGATGCTTGAGGAGGCAATAAATGAGTACAAAGGCACTGATATCACAGTTTCTCATGACCGATACTTTATAAAGCATATAGTTAATAGAGTAGTGGAAGTTAAAGACAGAAGATTACAAGATTATGCAGGCAATTACAATTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCGAGCGTGAGGCAGAGATCGAGGAGAAGGCTCCTAAAGACAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCAGCAAGCAAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

123

Amino Acids

14.52

Weight (kDa)

8.67

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 63
AluBI AGCT 2 cut(s) 247, 326
AluI AGCT 2 cut(s) 247, 326
Alw21I GWGCWC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 248
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 1 cut(s) 19
BfaI CTAG 4 cut(s) 23, 215, 227, 234
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 3 cut(s) 60, 220, 333
BpuEI CTTGAG 1 cut(s) 95
BseGI GGATG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 92, 284
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 248
BsmI GAATGC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 264
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 279
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 196, 348, 360
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 196, 348, 360
CciI TCATGA 1 cut(s) 121
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 122
CviJI RGCY 6 cut(s) 10, 247, 278, 293, 314, 326
CviKI_1 RGCY 6 cut(s) 10, 247, 278, 293, 314, 326
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 247
EcoRV GATATC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 125
FaiI YATR 6 cut(s) 123, 137, 144, 146, 192, 370
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 121
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 249
FspBI CTAG 4 cut(s) 23, 215, 227, 234
Hin1II CATG 1 cut(s) 125
HinfI GANTC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 4 cut(s) 29, 122, 215, 227
HpyAV CCTTC 2 cut(s) 69, 268
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 194, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 14, 180, 332, 368
LweI GCATC 3 cut(s) 60, 220, 333
MaeI CTAG 4 cut(s) 23, 215, 227, 234
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 3 cut(s) 189, 232, 343
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 199, 205
MnlI CCTC 4 cut(s) 70, 73, 250, 262
MseI TTAA 2 cut(s) 150, 168
Mva1269I GAATGC 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 223
PsiI TTATAA 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 279
PspXI VCTCGAGB 1 cut(s) 248
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 150, 168
Sau3AI GATC 1 cut(s) 264
SduI GDGCHC 1 cut(s) 249
SetI ASST 2 cut(s) 249, 328
SfaNI GCATC 3 cut(s) 60, 220, 333
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 74, 248
SmoI CTYRAG 2 cut(s) 74, 248
Sse9I AATT 2 cut(s) 199, 205
SspMI CTAG 4 cut(s) 23, 215, 227, 234
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 249, 267
TaqII GACCGA 1 cut(s) 141
TasI AATT 2 cut(s) 199, 205
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 150, 168
Tru9I TTAA 2 cut(s) 150, 168
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 109
XbaI TCTAGA 2 cut(s) 214, 226
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 4 cut(s) 23, 215, 227, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.