RchiOBHm_Chr2g0116831

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000380
Physical Location & Seq
Forward (+)
29049620 .. 29050899
1280 bp
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UTR
Exon/CDS
Intron
PRQ48984

Sequence Viewer

Length: 351 bp
ATGGGTTTACAAAAGCCAATGGCAGGTGAAGTTCTACTTGGGGAGCATAATGTCCTAACAAACTTTTTTGAGCAAAATCAGGCTGAGGCACTTATTGATTTAAATAAAACAGTGCCTGAGACAGTAGAAGAAGCAGCAGAGGATTGGAGACTTGATGATATTAAGGGCCTCCTTGGTTGTTGTCATTTCAAAGCAGATATGCTTGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGGCACGCCTTGCCTTCTGCAAGTTCGTGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGAGGTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

116

Amino Acids

12.96

Weight (kDa)

4.77

Isoelectric Point (pI)

20.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 103 3.2e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 190, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
Alw26I GTCTC 2 cut(s) 113, 142
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 38, 245
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 113, 142
BfaI CTAG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 75, 108
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 113, 142
BsnI GGCC 1 cut(s) 168
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 2 cut(s) 76, 109
BspMI ACCTGC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 112, 124
BstAFI CTTAAG 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 84, 117
BstF5I GGATG 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 113, 142
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 166
CviJI RGCY 4 cut(s) 16, 83, 168, 274
CviKI_1 RGCY 4 cut(s) 16, 83, 168, 274
DdeI CTNAG 2 cut(s) 84, 117
DraI TTTAAA 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaiI YATR 2 cut(s) 48, 200
FalI AAGNNNNNCTT 3 cut(s) 21, 53, 321
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 168
HphI GGTGA 2 cut(s) 38, 245
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 3 cut(s) 232, 262, 333
HpyCH4III ACNGT 2 cut(s) 112, 124
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 84, 117
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 9, 65, 129, 278
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 287
MboII GAAGA 1 cut(s) 140
MnlI CCTC 5 cut(s) 79, 133, 179, 230, 334
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 3 cut(s) 101, 162, 224
MspCI CTTAAG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 248
PaqCI CACCTGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 116
SaqAI TTAA 3 cut(s) 101, 162, 224
SatI GCNGC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 166
SetI ASST 3 cut(s) 28, 216, 345
SfaNI GCATC 1 cut(s) 324
SmiI ATTTAAAT 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 223, 338
SmoI CTYRAG 2 cut(s) 223, 338
SspMI CTAG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 172
SwaI ATTTAAAT 1 cut(s) 102
TaaI ACNGT 2 cut(s) 112, 124
Tru1I TTAA 3 cut(s) 101, 162, 224
Tru9I TTAA 3 cut(s) 101, 162, 224
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.