Rh2DG271600

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000380
Physical Location & Seq
Forward (+)
29996715 .. 30023863
27149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG271600.1

Sequence Viewer

Length: 156 bp
ATGAAATTTCATGATGTGCAGTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCCATCGGGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGTTATGAAATCAGCTACATTGGACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

51

Amino Acids

6.09

Weight (kDa)

9.0

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 61, 140
AluI AGCT 2 cut(s) 61, 140
Alw21I GWGCWC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 72
BfaI CTAG 3 cut(s) 29, 41, 48
BmcAI AGTACT 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 63
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 123
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 11
CviJI RGCY 4 cut(s) 61, 92, 107, 140
CviKI_1 RGCY 4 cut(s) 61, 92, 107, 140
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 131
FatI CATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 3 cut(s) 29, 41, 48
Hin1II CATG 1 cut(s) 14
HinfI GANTC 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 11, 29, 41, 68
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 14
LmnI GCTCC 2 cut(s) 66, 97
LweI GCATC 1 cut(s) 34
MaeI CTAG 3 cut(s) 29, 41, 48
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 5
MnlI CCTC 2 cut(s) 64, 76
MseI TTAA 1 cut(s) 154
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 93
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 23
SduI GDGCHC 1 cut(s) 63
SetI ASST 3 cut(s) 63, 129, 142
SfaNI GCATC 1 cut(s) 34
SgeI CNNG 5 cut(s) 23, 41, 53, 60, 80
SinI GGWCC 1 cut(s) 148
Sse9I AATT 1 cut(s) 5
SspMI CTAG 3 cut(s) 29, 41, 48
SstI GAGCTC 1 cut(s) 63
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 154
Tru9I TTAA 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 17, 146
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 5
XbaI TCTAGA 2 cut(s) 28, 40
XspI CTAG 3 cut(s) 29, 41, 48
ZrmI AGTACT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.