Rh2DG290700

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000380
Physical Location & Seq
Forward (+)
34066629 .. 34112383
45755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG290700.1

Sequence Viewer

Length: 1053 bp
ATGTCTACCTGCAAAAGTTTACCTACTTTGTCATCCTGCTGGGTTTGGAATCAGGTCGGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTGTGGAGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTAATATGGTCTGCTTTTAAGGAGGAGATGGAGGTGCCAGAGAGGCTGGAGAGGGTGCAAAAGGCTTTGGAGAGTGTTGTGGAGGATATGGACTTGATGGGGCGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTAGATGCAAAGATTAGTAAGGTGATGCCGGAACTTGGGTTTGCGCCTGAGGATGGGGATAGGTTGGTGGCTTCATTTAGTAGTGGCTGGCAGATGAGGATGTCACCTGGGAAGATTTTGCTTCAGCACCTTGATTTACTACTGCTGGACGAGCCTACAAATCACCTTGACCTTGACACAATCGAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCCAATGGCTGAGGCACTTATTGATTTAAATAAAACAGTGCCTGAGACAGTAGAAGAAGCAGCAGAGGATTGGAGACTTGATGATATTAAGGGCCTCCTTGGTTGTTGTCATTTCAAAGCAGATATGCTTGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGGCACGCCTTGCCTTCTGCAAGTTCGTGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGAGGAGGCAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTAGTGGAAGTTAAAGACAGAAGATTGCAAGATTATGCAGGCAATTACAATTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCCATCGGGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGGGAGTCAAATATTTATTGCACTTATCTCATTTGCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

350

Amino Acids

40.06

Weight (kDa)

4.92

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 185 - 248 5.1e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 242, 398
AfaI GTAC 2 cut(s) 91, 794
AfiI CCNNNNNNNGG 3 cut(s) 326, 344, 955
AflII CTTAAG 1 cut(s) 658
AgsI TTSAA 2 cut(s) 625, 762
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 6 cut(s) 80, 107, 130, 247, 256, 946
AluI AGCT 6 cut(s) 80, 107, 130, 247, 256, 946
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 2 cut(s) 548, 577
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 649
AspLEI GCGC 2 cut(s) 271, 337
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 4 cut(s) 325, 387, 446, 680
AsuNHI GCTAGC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 339
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 948
Bbv12I GWGCWC 1 cut(s) 948
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 581
BccI CCATC 5 cut(s) 151, 220, 338, 718, 957
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 548, 577
BfaI CTAG 5 cut(s) 77, 722, 914, 926, 933
BfrI CTTAAG 1 cut(s) 658
BfuAI ACCTGC 1 cut(s) 17
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 2 cut(s) 233, 570
BlsI GCNGC 2 cut(s) 234, 571
Bme1390I CCNGG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 2 cut(s) 165, 978
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 4 cut(s) 286, 306, 759, 919
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 304, 794
BsaJI CCNNGG 2 cut(s) 398, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 344, 955
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 398, 607
BseGI GGATG 6 cut(s) 32, 247, 349, 396, 511, 736
BseLI CCNNNNNNNGG 3 cut(s) 326, 344, 955
BseMII CTCAG 4 cut(s) 134, 330, 510, 543
BseRI GAGGAG 3 cut(s) 167, 791, 983
BseXI GCAGC 1 cut(s) 581
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 948
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 3 cut(s) 326, 344, 955
BsmAI GTCTC 2 cut(s) 548, 577
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 948
Bsp1407I TGTACA 1 cut(s) 89
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 4 cut(s) 133, 331, 511, 544
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 165, 978
BspMI ACCTGC 1 cut(s) 17
BspOI GCTAGC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 163
BspTI CTTAAG 1 cut(s) 658
BsrGI TGTACA 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 398, 607
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 5 cut(s) 96, 547, 559, 805, 814
Bst6I CTCTTC 2 cut(s) 61, 120
BstAFI CTTAAG 1 cut(s) 658
BstAPI GCANNNNNTGC 2 cut(s) 508, 683
BstAUI TGTACA 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 78, 380, 679, 895
BstDEI CTNAG 5 cut(s) 120, 339, 519, 552, 1008
BstF5I GGATG 6 cut(s) 32, 247, 349, 396, 511, 736
BstHHI GCGC 2 cut(s) 271, 337
BstMAI GTCTC 2 cut(s) 548, 577
BstMWI GCNNNNNNNGC 5 cut(s) 172, 253, 442, 508, 683
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 581
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 6 cut(s) 32, 247, 349, 396, 511, 736
BtsIMutI CAGTG 3 cut(s) 92, 552, 801
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 4 cut(s) 78, 380, 679, 895
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 820
CfoI GCGC 2 cut(s) 271, 337
Cfr13I GGNCC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 90, 793
CviAII CATG 1 cut(s) 821
CviQI GTAC 2 cut(s) 90, 793
DdeI CTNAG 5 cut(s) 120, 339, 519, 552, 1008
DraI TTTAAA 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 61, 120
EarI CTCTTC 2 cut(s) 61, 120
Ecl136II GAGCTC 1 cut(s) 946
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 948
Eco53kI GAGCTC 1 cut(s) 946
Eco57I CTGAAG 2 cut(s) 242, 398
Eco81I CCTNAGG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 1 cut(s) 824
FaiI YATR 7 cut(s) 136, 218, 290, 635, 822, 836, 891
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 820
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 233, 570
FokI GGATG 6 cut(s) 19, 254, 356, 403, 518, 743
FriOI GRGCYC 1 cut(s) 948
Fsp4HI GCNGC 2 cut(s) 233, 570
FspBI CTAG 5 cut(s) 77, 722, 914, 926, 933
GlaI GCGC 2 cut(s) 270, 336
GluI GCNGC 2 cut(s) 233, 570
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 320
HhaI GCGC 2 cut(s) 271, 337
Hin1II CATG 1 cut(s) 824
Hin6I GCGC 2 cut(s) 269, 335
HinP1I GCGC 2 cut(s) 269, 335
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 5 cut(s) 49, 116, 262, 922, 1015
HpaII CCGG 1 cut(s) 320
HphI GGTGA 4 cut(s) 325, 387, 446, 680
Hpy166II GTNNAC 4 cut(s) 6, 20, 90, 92
Hpy188I TCNGA 2 cut(s) 59, 261
Hpy188III TCNNGA 6 cut(s) 122, 728, 821, 914, 926, 953
Hpy8I GTNNAC 4 cut(s) 6, 20, 90, 92
HpyAV CCTTC 4 cut(s) 667, 697, 768, 967
HpyCH4III ACNGT 5 cut(s) 96, 547, 559, 805, 814
HpyCH4V TGCA 7 cut(s) 12, 187, 299, 693, 883, 893, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 253, 442, 508, 683
HpyF3I CTNAG 5 cut(s) 120, 339, 519, 552, 1008
Hsp92II CATG 1 cut(s) 824
HspAI GCGC 2 cut(s) 269, 335
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 951, 982
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 4 cut(s) 286, 306, 759, 919
MaeI CTAG 5 cut(s) 77, 722, 914, 926, 933
MaeIII GTNAC 2 cut(s) 278, 393
MboII GAAGA 8 cut(s) 75, 78, 137, 415, 497, 575, 888, 931
MhlI GDGCHC 1 cut(s) 948
MluCI AATT 2 cut(s) 898, 904
MlyI GAGTC 2 cut(s) 110, 1024
MmeI TCCRAC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 649
MseI TTAA 6 cut(s) 147, 536, 597, 659, 849, 867
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 5 cut(s) 172, 253, 442, 508, 683
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 824
NlaIV GGNNCC 2 cut(s) 165, 978
NmuCI GTSAC 2 cut(s) 278, 393
PagI TCATGA 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 49, 262, 922
PkrI GCNGC 2 cut(s) 234, 571
PleI GAGTC 2 cut(s) 110, 1023
PpsI GAGTC 2 cut(s) 110, 1023
PsiI TTATAA 1 cut(s) 836
Psp124BI GAGCTC 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 165, 978
PspPI GGNCC 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 91, 794
RsaNI GTAC 2 cut(s) 90, 793
SacI GAGCTC 1 cut(s) 948
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 6 cut(s) 147, 536, 597, 659, 849, 867
SatI GCNGC 2 cut(s) 233, 570
Sau96I GGNCC 1 cut(s) 601
SchI GAGTC 2 cut(s) 110, 1024
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 948
SfaNI GCATC 4 cut(s) 286, 306, 759, 919
SmiI ATTTAAAT 1 cut(s) 537
SmlI CTYRAG 3 cut(s) 283, 658, 773
SmoI CTYRAG 3 cut(s) 283, 658, 773
Sse9I AATT 2 cut(s) 898, 904
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 1023
SspMI CTAG 5 cut(s) 77, 722, 914, 926, 933
SstI GAGCTC 1 cut(s) 948
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 607
SwaI ATTTAAAT 1 cut(s) 537
TaaI ACNGT 5 cut(s) 96, 547, 559, 805, 814
TaqI TCGA 2 cut(s) 474, 483
TaqII GACCGA 1 cut(s) 840
TasI AATT 2 cut(s) 898, 904
TatI WGTACW 2 cut(s) 89, 792
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 49, 262, 922
Tru1I TTAA 6 cut(s) 147, 536, 597, 659, 849, 867
Tru9I TTAA 6 cut(s) 147, 536, 597, 659, 849, 867
TscAI CASTG 3 cut(s) 99, 552, 808
TseFI GTSAC 2 cut(s) 278, 393
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 278, 393
TspDTI ATGAA 2 cut(s) 354, 747
TspRI CASTG 3 cut(s) 99, 552, 808
Vha464I CTTAAG 1 cut(s) 658
XbaI TCTAGA 2 cut(s) 913, 925
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 649
XspI CTAG 5 cut(s) 77, 722, 914, 926, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.