Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Forward (+)

39754586 .. 39759363

Gene Structure 4778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCAGGGATGGGAACGACGCTGGAACTGAAGAAGAGAACTGACTGGATTGAGATCGACTTTGGCTGGACTGAGATTGACAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

115

Amino Acids

12.93

Weight (kDa)

4.72

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AciI	CCGC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	11, 176
AgsI	TTSAA	3 cut(s)	112, 240, 313
AjnI	CCWGG	2 cut(s)	4, 333
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	215, 328
ApoI	RAATTY	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AsuHPI	GGTGA	2 cut(s)	126, 209
BbvI	GCAGC	2 cut(s)	202, 315
BccI	CCATC	2 cut(s)	4, 170
BciT130I	CCWGG	2 cut(s)	6, 335
BciVI	GTATCC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	216, 329
BlsI	GCNGC	2 cut(s)	217, 330
Bme1390I	CCNGG	2 cut(s)	6, 335
BmrFI	CCNGG	2 cut(s)	6, 335
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	5, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 176
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	6, 335
BseDI	CCNNGG	2 cut(s)	5, 334
BseGI	GGATG	3 cut(s)	15, 142, 181
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	11, 176
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	202, 315
BseYI	CCCAGC	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	11, 176
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	5, 334
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	6, 335
Bst4CI	ACNGT	2 cut(s)	83, 304
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	15, 142, 181
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	6, 335
BstSCI	CCNGG	2 cut(s)	4, 333
BstV1I	GCAGC	2 cut(s)	202, 315
BsuI	GTATCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	15, 142, 181
BtsIMutI	CAGTG	1 cut(s)	309
CseI	GACGC	1 cut(s)	28
CviJI	RGCY	4 cut(s)	66, 140, 233, 328
CviKI_1	RGCY	4 cut(s)	66, 140, 233, 328
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	4, 333
FaiI	YATR	7 cut(s)	91, 93, 155, 206, 295, 344, 346
FaqI	GGGAC	1 cut(s)	235
FauNDI	CATATG	2 cut(s)	91, 344
Fnu4HI	GCNGC	2 cut(s)	216, 329
FokI	GGATG	3 cut(s)	22, 129, 188
Fsp4HI	GCNGC	2 cut(s)	216, 329
GluI	GCNGC	2 cut(s)	216, 329
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	28
HphI	GGTGA	2 cut(s)	126, 209
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	83, 304
HpyCH4V	TGCA	3 cut(s)	163, 274, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	9 cut(s)	8, 18, 31, 52, 150, 159, 183, 204, 320
Lsp1109I	GCAGC	2 cut(s)	202, 315
LweI	GCATC	1 cut(s)	202
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	43, 46, 120
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	2 cut(s)	149, 192
MnlI	CCTC	2 cut(s)	142, 166
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	6, 335
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	6, 335
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeI	CATATG	2 cut(s)	91, 344
NdeII	GATC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	217, 330
Psp6I	CCWGG	2 cut(s)	4, 333
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	4, 333
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	216, 329
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	6, 335
SetI	ASST	2 cut(s)	142, 285
SfaNI	GCATC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	149, 192
SsiI	CCGC	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	4, 333
TaaI	ACNGT	2 cut(s)	83, 304
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	149, 192
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	215, 328
TspDTI	ATGAA	2 cut(s)	108, 142
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.