Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Reverse (-)

8181100 .. 8181789

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0049700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAAGGTGAATACGGAGGTGGTGACACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAATCTCATCCTCACCCCCAGCAGCAACACTACCACCACCATTTCTCCAACCCATTTCAGATCACCCTAGTCCGCGAATGTCAGCCTCAAACTTCTGAAGAAGAAGAAGACACCAGCCGAACCAGCAGCGGCACAGCCACCAAGCCGCTTGTTTCAAATCCCAACAACCCCACTGACTGCGACGGCGCCACCATTGAAGTCGTCCGCAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCTCCCGTCATCATAACCCGCGACACCGAGCCCGCCATGAGCCCGTACATTCTTGAAGTCCCCGGCGGAAGCGACGTCGTCGAAGTCGTCTCGAGATTCTGCTGCCGCAAGAACATCGGATTCGTCGCCAACGTTCCACGGCCGCTTCGACATCCTCTCGATCTCCGCCACGTTCCTTCCGCAAACGACGGCGACCGGCCTGATCCCCAACGGCTTCACCATCTCTCTTGCCGGACCGCAGGGACAGATCGTCGAGGACACGTCGCAAGAGGAGTCCGGTTTTGTCCAGACCCACAGAGGGCCAACAAAGTCCCGTCGTTGCCGCCAGACCGGGAGGAAGAAGTTTCAATTTCTCTTAGGCCCGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.55

Weight (kDa)

8.27

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	2 cut(s)	144, 339
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	2 cut(s)	255, 393
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflIII	ACRYGT	2 cut(s)	36, 577
AgsI	TTSAA	4 cut(s)	225, 266, 374, 666
AhdI	GACNNNNNGTC	1 cut(s)	567
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	49, 687
AluI	AGCT	2 cut(s)	49, 687
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	6 cut(s)	278, 286, 458, 515, 618, 677
ApeKI	GCWGC	3 cut(s)	91, 195, 420
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	5 cut(s)	279, 286, 552, 618, 678
AsuC2I	CCSGG	3 cut(s)	297, 381, 650
AsuHPI	GGTGA	6 cut(s)	20, 35, 44, 74, 124, 527
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	351, 362
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	103, 207, 407
BccI	CCATC	2 cut(s)	63, 546
BceAI	ACGGC	4 cut(s)	268, 473, 523, 545
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	3 cut(s)	297, 381, 650
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	137, 688
BfoI	RGCGCY	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	9 cut(s)	92, 196, 199, 215, 289, 421, 424, 461, 641
BlsI	GCNGC	9 cut(s)	93, 197, 200, 216, 290, 422, 425, 462, 642
Bme1390I	CCNGG	4 cut(s)	283, 297, 381, 650
Bme18I	GGWCC	1 cut(s)	552
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	409
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	5 cut(s)	279, 286, 552, 618, 678
BmiI	GGNNCC	3 cut(s)	256, 287, 301
BmrFI	CCNGG	4 cut(s)	283, 297, 381, 650
BpiI	GAAGAC	1 cut(s)	183
BpuMI	CCSGG	3 cut(s)	297, 381, 650
BsaHI	GRCGYC	2 cut(s)	255, 393
BsaJI	CCNNGG	4 cut(s)	281, 282, 379, 455
BsaWI	WCCGGW	1 cut(s)	594
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	4 cut(s)	281, 282, 379, 455
BseGI	GGATG	2 cut(s)	76, 469
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	603
BseX3I	CGGCCG	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	103, 207, 407
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	2 cut(s)	144, 339
Bsh1285I	CGRYCG	2 cut(s)	461, 514
BshFI	GGCC	6 cut(s)	280, 288, 460, 517, 620, 679
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	2 cut(s)	461, 514
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	6 cut(s)	297, 381, 514, 550, 595, 649
BslFI	GGGAC	3 cut(s)	362, 574, 614
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	412
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	3 cut(s)	362, 574, 614
BsnI	GGCC	6 cut(s)	280, 288, 460, 517, 620, 679
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	351, 362
Bsp143I	GATC	4 cut(s)	129, 478, 520, 565
BspANI	GGCC	6 cut(s)	280, 288, 460, 517, 620, 679
BspFNI	CGCG	2 cut(s)	144, 339
BspLI	GGNNCC	3 cut(s)	256, 287, 301
BspPI	GGATC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	4 cut(s)	281, 282, 379, 455
BssMI	GATC	4 cut(s)	129, 478, 520, 565
BssNI	GRCGYC	2 cut(s)	255, 393
Bst2UI	CCWGG	1 cut(s)	283
BstACI	GRCGYC	2 cut(s)	255, 393
BstC8I	GCNNGC	2 cut(s)	278, 351
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	76, 469
BstFNI	CGCG	2 cut(s)	144, 339
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	4 cut(s)	132, 481, 523, 568
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	4 cut(s)	129, 478, 520, 565
BstMCI	CGRYCG	2 cut(s)	461, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 297
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	4 cut(s)	281, 295, 379, 648
BstUI	CGCG	2 cut(s)	144, 339
BstV1I	GCAGC	3 cut(s)	103, 207, 407
BstV2I	GAAGAC	1 cut(s)	183
BstZI	CGGCCG	1 cut(s)	458
BsuRI	GGCC	6 cut(s)	280, 288, 460, 517, 620, 679
BtgI	CCRYGG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	76, 469
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	278, 351
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	5 cut(s)	279, 286, 552, 618, 678
CpoI	CGGWCCG	1 cut(s)	552
Csp6I	GTAC	1 cut(s)	364
CspI	CGGWCCG	1 cut(s)	552
CviAII	CATG	2 cut(s)	37, 355
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	674
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	4 cut(s)	131, 480, 522, 567
DpnII	GATC	4 cut(s)	129, 478, 520, 565
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	458
EagI	CGGCCG	1 cut(s)	458
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EciI	GGCGGA	2 cut(s)	399, 473
EclXI	CGGCCG	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	351, 362
Eco47I	GGWCC	1 cut(s)	552
Eco52I	CGGCCG	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	281
EcoT38I	GRGCYC	2 cut(s)	351, 362
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	2 cut(s)	40, 358
FaiI	YATR	4 cut(s)	38, 60, 332, 356
FaqI	GGGAC	3 cut(s)	362, 574, 614
FatI	CATG	2 cut(s)	36, 354
FauI	CCCGC	2 cut(s)	344, 358
Fnu4HI	GCNGC	9 cut(s)	92, 196, 199, 215, 289, 421, 424, 461, 641
FokI	GGATG	2 cut(s)	63, 456
FriOI	GRGCYC	2 cut(s)	351, 362
Fsp4HI	GCNGC	9 cut(s)	92, 196, 199, 215, 289, 421, 424, 461, 641
FspBI	CTAG	2 cut(s)	137, 688
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	9 cut(s)	92, 196, 199, 215, 289, 421, 424, 461, 641
GsaI	CCCAGC	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	6 cut(s)	280, 288, 460, 517, 620, 679
HapII	CCGG	6 cut(s)	297, 381, 514, 550, 595, 649
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	2 cut(s)	255, 393
Hin1II	CATG	2 cut(s)	40, 358
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	414, 438, 591
HpaII	CCGG	6 cut(s)	297, 381, 514, 550, 595, 649
HphI	GGTGA	6 cut(s)	20, 35, 44, 74, 124, 527
Hpy188I	TCNGA	3 cut(s)	129, 166, 437
Hpy188III	TCNNGA	6 cut(s)	43, 371, 409, 411, 476, 605
Hpy99I	CGWCG	9 cut(s)	254, 395, 398, 401, 446, 509, 573, 584, 637
HpyAV	CCTTC	1 cut(s)	504
HpyCH4IV	ACGT	4 cut(s)	393, 450, 489, 579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 297
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	4 cut(s)	393, 450, 489, 579
Hsp92I	GRCGYC	2 cut(s)	255, 393
Hsp92II	CATG	2 cut(s)	40, 358
HspAI	GCGC	1 cut(s)	255
KasI	GGCGCC	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	129, 478, 520, 565
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	3 cut(s)	103, 207, 407
MaeI	CTAG	2 cut(s)	137, 688
MaeII	ACGT	4 cut(s)	393, 450, 489, 579
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	131, 480, 522, 567
MboI	GATC	4 cut(s)	129, 478, 520, 565
MboII	GAAGA	5 cut(s)	179, 182, 185, 188, 668
MhlI	GDGCHC	2 cut(s)	351, 362
MluCI	AATT	1 cut(s)	666
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	6 cut(s)	297, 381, 514, 550, 595, 649
MspR9I	CCNGG	4 cut(s)	283, 297, 381, 650
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	144, 339
MwoI	GCNNNNNNNGC	2 cut(s)	192, 297
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	297, 381, 650
NdeII	GATC	4 cut(s)	129, 478, 520, 565
NlaIII	CATG	2 cut(s)	40, 358
NlaIV	GGNNCC	3 cut(s)	256, 287, 301
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	409
PasI	CCCWGGG	1 cut(s)	282
PciI	ACATGT	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	3 cut(s)	402, 447, 463
PfeI	GAWTC	2 cut(s)	414, 438
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	9 cut(s)	93, 197, 200, 216, 290, 422, 425, 462, 642
PleI	GAGTC	1 cut(s)	599
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	256, 287, 301
PspPI	GGNCC	5 cut(s)	279, 286, 552, 618, 678
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
Rsr2I	CGGWCCG	1 cut(s)	552
RsrII	CGGWCCG	1 cut(s)	552
SatI	GCNGC	9 cut(s)	92, 196, 199, 215, 289, 421, 424, 461, 641
Sau3AI	GATC	4 cut(s)	129, 478, 520, 565
Sau96I	GGNCC	5 cut(s)	279, 286, 552, 618, 678
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	4 cut(s)	283, 297, 381, 650
SduI	GDGCHC	2 cut(s)	351, 362
SetI	ASST	8 cut(s)	10, 22, 51, 396, 453, 492, 582, 689
SfoI	GGCGCC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	552
SlaI	CTCGAG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	1 cut(s)	666
SspDI	GGCGCC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	137, 688
StyD4I	CCNGG	4 cut(s)	281, 295, 379, 648
TaiI	ACGT	4 cut(s)	396, 453, 492, 582
TaqI	TCGA	6 cut(s)	44, 399, 410, 466, 477, 571
TasI	AATT	1 cut(s)	666
TauI	GCSGC	6 cut(s)	201, 217, 291, 426, 463, 643
TfiI	GAWTC	2 cut(s)	414, 438
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	3 cut(s)	91, 195, 420
Tsp45I	GTSAC	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	552
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	409
XspI	CTAG	2 cut(s)	137, 688
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.