Rorug06G0216300

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000380
Physical Location & Seq
Forward (+)
34518574 .. 34519836
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0216300.1

Sequence Viewer

Length: 645 bp
ATGGATTTTTCAGACTACCCAACAGGCAAGTCTCCAAGAAGAGAGCTCCAACTCCAGGGTCCACGTCCAACACCTCTCAAGATTCATAAAGATTCCCACAAGATCAAGAAGCCACCGATTGTTCCTCAACCCTCGCAACCTAATCAGCCTCACCAGCCGCCTCGACAACCGGTTATAATCTACACAGTCTCGCCGAAGATCATTCACACAAACCCTAGCGACTTCATGAACCTCGTCCAACGCCTCACCGGATTACCTCGCTCCAATTCTTCTGCTTCTTGTTCTTCCTCGTCTCCTCGAAATGATCAAAACACTAATGGAGGCGGTGGTGAATCGACAATGGAGCAGTCTAGGTCGTCGGATCATGAAGGAATCATGGACATGGATGATGATGATCGTGATCGTGATGCTGATGTGAAGCAGCAAAGGGGTTTGTTTCCGGGGATCTTGTCGCCAGCTCCGGGTGCGCTTCCTCCGATTCCTTCAAGCTTCTTCTCTCCGGCGGCGGATAGCTTCTTCCATGATTTGAGCCCGGTACTTCATGGTAACAGGAACTTCATAGAAGGTAGCTTCATGCCTAGTCCGTCCAACTTCTTTTCCCCTACTCCGTCCATTGACTTATTCAACAATTTTTCCGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

214

Amino Acids

23.56

Weight (kDa)

6.14

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 62 - 86 3.5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AciI CCGC 4 cut(s) 158, 324, 503, 506
AclWI GGATC 2 cut(s) 369, 452
AfaI GTAC 1 cut(s) 537
AfiI CCNNNNNNNGG 2 cut(s) 55, 461
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 486, 625
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 5 cut(s) 46, 458, 489, 513, 570
AluI AGCT 5 cut(s) 46, 458, 489, 513, 570
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 36, 193, 297
AlwI GGATC 2 cut(s) 369, 452
ApeKI GCWGC 1 cut(s) 421
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 3 cut(s) 441, 462, 533
AsuHPI GGTGA 3 cut(s) 143, 238, 341
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 48, 533
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 3 cut(s) 441, 462, 533
BcoDI GTCTC 3 cut(s) 36, 193, 297
BfaI CTAG 3 cut(s) 216, 351, 579
BisI GCNGC 3 cut(s) 158, 422, 504
BlsI GCNGC 3 cut(s) 159, 423, 505
Bme1390I CCNGG 4 cut(s) 56, 441, 462, 533
Bme18I GGWCC 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 4 cut(s) 56, 441, 462, 533
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 3 cut(s) 441, 462, 533
BsaBI GATNNNNATC 2 cut(s) 393, 399
BsaJI CCNNGG 2 cut(s) 55, 440
BsaWI WCCGGW 2 cut(s) 169, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 461
Bse118I RCCGGY 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 393, 399
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 55, 440
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 2 cut(s) 393, 399
BseLI CCNNNNNNNGG 2 cut(s) 55, 461
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
BslI CCNNNNNNNGG 2 cut(s) 55, 461
BsmAI GTCTC 3 cut(s) 36, 193, 297
BsmBI CGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 48, 533
Bsp143I GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
BspACI CCGC 4 cut(s) 158, 324, 503, 506
BspHI TCATGA 2 cut(s) 225, 364
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 369, 452
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 55, 440
BssMI GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 456
BstF5I GGATG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 7 cut(s) 105, 201, 307, 364, 397, 403, 447
BstMAI GTCTC 3 cut(s) 36, 193, 297
BstMBI GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
BstMWI GCNNNNNNNGC 2 cut(s) 154, 464
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 4 cut(s) 54, 439, 460, 531
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 456
CciI TCATGA 2 cut(s) 225, 364
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 536
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 7 cut(s) 226, 365, 376, 382, 521, 542, 574
CviJI RGCY 9 cut(s) 46, 112, 148, 157, 458, 489, 513, 531, 570
CviKI_1 RGCY 9 cut(s) 46, 112, 148, 157, 458, 489, 513, 531, 570
CviQI GTAC 1 cut(s) 536
DpnI GATC 7 cut(s) 104, 200, 306, 363, 396, 402, 446
DpnII GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 2 cut(s) 48, 533
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 48, 533
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
FatI CATG 7 cut(s) 225, 364, 375, 381, 520, 541, 573
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 158, 422, 504
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 2 cut(s) 48, 533
Fsp4HI GCNGC 3 cut(s) 158, 422, 504
FspBI CTAG 3 cut(s) 216, 351, 579
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 158, 422, 504
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
HhaI GCGC 1 cut(s) 469
Hin1II CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 5 cut(s) 82, 92, 332, 372, 478
HpaII CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
HphI GGTGA 3 cut(s) 143, 238, 341
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 4 cut(s) 13, 361, 477, 637
Hpy188III TCNNGA 6 cut(s) 79, 106, 226, 365, 398, 404
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 362, 492, 557
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 464
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
LmnI GCTCC 4 cut(s) 51, 266, 343, 463
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 216, 351, 579
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 545
MalI GATC 7 cut(s) 104, 200, 306, 363, 396, 402, 446
MboI GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
MboII GAAGA 6 cut(s) 51, 208, 261, 276, 484, 508
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 48, 533
MluCI AATT 2 cut(s) 265, 628
MmeI TCCRAC 5 cut(s) 73, 92, 262, 339, 612
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
MspR9I CCNGG 4 cut(s) 56, 441, 462, 533
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 154, 464
NciI CCSGG 3 cut(s) 441, 462, 533
NdeII GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
NlaIII CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
NlaIV GGNNCC 1 cut(s) 60
PagI TCATGA 2 cut(s) 225, 364
PfeI GAWTC 5 cut(s) 82, 92, 332, 372, 478
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 159, 423, 505
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 3 cut(s) 158, 422, 504
Sau3AI GATC 7 cut(s) 102, 198, 304, 361, 394, 400, 444
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 56, 441, 462, 533
SduI GDGCHC 2 cut(s) 48, 533
SfaNI GCATC 1 cut(s) 397
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 265, 628
SsiI CCGC 4 cut(s) 158, 324, 503, 506
SspMI CTAG 3 cut(s) 216, 351, 579
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 54, 439, 460, 531
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 163, 298, 335
TasI AATT 2 cut(s) 265, 628
TauI GCSGC 2 cut(s) 160, 506
TfiI GAWTC 5 cut(s) 82, 92, 332, 372, 478
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 7 cut(s) 74, 214, 242, 381, 530, 547, 562
TspGWI ACGGA 2 cut(s) 573, 597
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 3 cut(s) 216, 351, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.