Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001896.1

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Reverse (-)

88481 .. 94445

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001896.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggcgttgggcaaggtgaaggagctcgtctcgtccaatccggtagtcatcttcaggttctctctacctcttcatcttcttctgtgtgtctatatatatagaattgtcgatcgttttgaaccaatttggaaatttgacaataagattttgtttcgcaacaacaagctttgtcctcactgtgtttgcgtgaagcagctcttcattcaacaagcattatgcgtggtcaagctgaaggtgttgttcaacaacaaccacaagggtgcggtgtctccgcctcaggtgtcatttatctctcagtacctctccattcactacgactttgaagatcagtctaccctccccaacagctccgtcgatgttggtcccagattgcaattccgtgcttcccatgatctcaaggcacaacaaggagaggcaactatggttgcgaagcttgctgaccctggatatgcatttcaactctcttcttctttccattctgctggtttgagtctatcatatgaagtgttttcctatttcaaaacaaccattacttcttcctcaccagctcatccagaattcatatttctgcaagaaccagaggcagctgctgcaactgtcctgggcatccaagttggatgtggattgcattcaagagatgagtctagagctaatgttgcacaagataatgaacttgtccatcagattcttcaagcatatgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.25

Weight (kDa)

7.67

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	2 cut(s)	263, 272
AcsI	RAATTY	2 cut(s)	131, 557
AcuI	CTGAAG	2 cut(s)	37, 251
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	8 cut(s)	119, 206, 244, 323, 458, 520, 633, 692
AjnI	CCWGG	2 cut(s)	442, 600
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	9 cut(s)	25, 166, 196, 229, 348, 433, 548, 587, 650
AluI	AGCT	9 cut(s)	25, 166, 196, 229, 348, 433, 548, 587, 650
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	34, 273
AlwNI	CAGNNNCTG	1 cut(s)	590
ApeKI	GCWGC	5 cut(s)	193, 584, 587, 590, 701
ApoI	RAATTY	2 cut(s)	131, 557
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	28, 534
AvaII	GGWCC	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	5 cut(s)	205, 574, 577, 596, 688
BccI	CCATC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	444, 602
BcoDI	GTCTC	2 cut(s)	34, 273
BfaI	CTAG	1 cut(s)	645
BisI	GCNGC	5 cut(s)	194, 585, 588, 591, 702
BlsI	GCNGC	5 cut(s)	195, 586, 589, 592, 703
Bme1390I	CCNGG	2 cut(s)	444, 602
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	444, 602
BmsI	GCATC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	442, 601
BsaWI	WCCGGW	1 cut(s)	40
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	444, 602
BseDI	CCNNGG	2 cut(s)	442, 601
BseGI	GGATG	3 cut(s)	550, 606, 623
BseMII	CTCAG	2 cut(s)	290, 308
BseXI	GCAGC	5 cut(s)	205, 574, 577, 596, 688
Bsh1285I	CGRYCG	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	34, 273
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	109, 325, 391
BspACI	CCGC	2 cut(s)	263, 272
BspCNI	CTCAG	2 cut(s)	289, 307
BspLI	GGNNCC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	442, 601
BssMI	GATC	3 cut(s)	109, 325, 391
Bst2UI	CCWGG	2 cut(s)	444, 602
Bst4CI	ACNGT	2 cut(s)	179, 598
Bst6I	CTCTTC	3 cut(s)	75, 203, 469
BstAPI	GCANNNNNTGC	2 cut(s)	590, 701
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	276, 294
BstF5I	GGATG	3 cut(s)	550, 606, 623
BstKTI	GATC	3 cut(s)	112, 328, 394
BstMAI	GTCTC	2 cut(s)	34, 273
BstMBI	GATC	3 cut(s)	109, 325, 391
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 590, 656, 701
BstNI	CCWGG	2 cut(s)	444, 602
BstSCI	CCNGG	2 cut(s)	442, 600
BstV1I	GCAGC	5 cut(s)	205, 574, 577, 596, 688
BstXI	CCANNNNNNTGG	1 cut(s)	482
Bsu36I	CCTNAGG	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	550, 606, 623
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	9 cut(s)	25, 166, 196, 229, 348, 433, 548, 587, 650
CviKI_1	RGCY	9 cut(s)	25, 166, 196, 229, 348, 433, 548, 587, 650
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	276, 294
DpnI	GATC	3 cut(s)	111, 327, 393
DpnII	GATC	3 cut(s)	109, 325, 391
Eam1104I	CTCTTC	3 cut(s)	75, 203, 469
EarI	CTCTTC	3 cut(s)	75, 203, 469
EciI	GGCGGA	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	37, 251
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	442, 600
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	392
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	388
FauNDI	CATATG	2 cut(s)	499, 697
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	5 cut(s)	194, 585, 588, 591, 702
FokI	GGATG	3 cut(s)	537, 593, 630
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	5 cut(s)	194, 585, 588, 591, 702
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	5 cut(s)	194, 585, 588, 591, 702
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	392
HindIII	AAGCTT	2 cut(s)	164, 431
HinfI	GANTC	3 cut(s)	490, 641, 685
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	28, 534
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	3 cut(s)	554, 633, 645
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	13, 226
HpyCH4III	ACNGT	2 cut(s)	179, 598
HpyCH4V	TGCA	7 cut(s)	373, 452, 571, 593, 628, 659, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 590, 656, 701
HpyF3I	CTNAG	2 cut(s)	276, 294
Hsp92II	CATG	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	109, 325, 391
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	22, 353
Lsp1109I	GCAGC	5 cut(s)	205, 574, 577, 596, 688
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	1 cut(s)	645
MalI	GATC	3 cut(s)	111, 327, 393
MboI	GATC	3 cut(s)	109, 325, 391
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	102, 123, 131, 374, 557
MlyI	GAGTC	2 cut(s)	499, 650
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	8 cut(s)	78, 183, 285, 311, 347, 406, 550, 574
Mph1103I	ATGCAT	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	444, 602
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	444, 602
MwoI	GCNNNNNNNGC	4 cut(s)	434, 590, 656, 701
NdeI	CATATG	2 cut(s)	499, 697
NdeII	GATC	3 cut(s)	109, 325, 391
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	454
OliI	CACNNNNGTG	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	685
PkrI	GCNGC	5 cut(s)	195, 586, 589, 592, 703
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	498, 649
PpsI	GAGTC	2 cut(s)	498, 649
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	442, 600
PspGI	CCWGG	2 cut(s)	442, 600
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	590
PvuI	CGATCG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	5 cut(s)	194, 585, 588, 591, 702
Sau3AI	GATC	3 cut(s)	109, 325, 391
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	499, 650
ScrFI	CCNGG	2 cut(s)	444, 602
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	615
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	102, 123, 131, 374, 557
SsiI	CCGC	2 cut(s)	263, 272
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	442, 600
TaaI	ACNGT	2 cut(s)	179, 598
TaqI	TCGA	2 cut(s)	108, 354
TasI	AATT	5 cut(s)	102, 123, 131, 374, 557
TfiI	GAWTC	1 cut(s)	685
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	5 cut(s)	193, 584, 587, 590, 701
TspDTI	ATGAA	5 cut(s)	62, 190, 516, 550, 684
TspGWI	ACGGA	2 cut(s)	340, 368
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	131, 557
XbaI	TCTAGA	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.