MD01G1020400.v1.1

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000380
Physical Location & Seq
Forward (+)
8335724 .. 8338419
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1020400.v1.1.491

Sequence Viewer

Length: 654 bp
ATGTCCGTAAAACGTGGTAAGAAGAATTCGAATGATTCCGAGGCTTCCAGTATTTCTTCCTGTGTGAAGCTCGAGAATGTCCGAAAGAGCTACAAGGGCGTCACTGTGTTGAAAGATGTCACTTGGGAAGTAAAAAAGGGAGATAAGGTTGGATTGGTTGGTGTAAATGGAGCAGGCAAAACCACCCAGATGAGAATTATTGCCGGTTTAGAAGAACCCGATTCCGGCAATGTCATCAAGGCCAAACCCAACATGAAGATCGCGTTTTTGAGCCAAGAATTTGAGGTTTCGATGAGTAGGACGGTCGATGAGGAGTTTATGAGTGCGTTTAAGGAGGAGATGGAGGTGGCTGGGAAGTTGGAGAAGGTGCAAAAAGGGTTGGAGAGTTCCGTAAATGATTTGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATAAGCTTCAGAATAGGGCGCAGGTGGCTGACTTGGATATGGTGGATTCAAAGATAAATAAGCTGATGTCGGAACTCGGGTTTGAGGATACAGATAGATTGGTAGCCTCCTTTAGCAGTGGTTGGCAGATGAGGATGTCGCTTGGGAAGGTTTTACTTCAGGATCCAGATTTACTACTCTTGGATGAGCCTACAAATCACCTTGACCTTGACACAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

218

Amino Acids

24.1

Weight (kDa)

4.99

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 37 - 210 1.1e-25 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 445
AccII CGCG 1 cut(s) 263
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 2 cut(s) 25, 278
AcuI CTGAAG 2 cut(s) 425, 575
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 112, 483
AluBI AGCT 4 cut(s) 70, 90, 439, 496
AluI AGCT 4 cut(s) 70, 90, 439, 496
AlwI GGATC 2 cut(s) 590, 603
Ama87I CYCGRG 2 cut(s) 71, 509
AoxI GGCC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 25, 278
AspLEI GCGC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 623
AsuII TTCGAA 1 cut(s) 29
AvaI CYCGRG 2 cut(s) 71, 509
BamHI GGATCC 1 cut(s) 595
BccI CCATC 2 cut(s) 334, 403
BciVI GTATCC 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 514
BmeT110I CYCGRG 2 cut(s) 71, 509
BmiI GGNNCC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 3 cut(s) 430, 573, 622
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 326, 350
BseYI CCCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 71, 509
BsiSI CCGG 2 cut(s) 204, 225
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 2 cut(s) 71, 509
Bsp119I TTCGAA 1 cut(s) 29
Bsp143I GATC 2 cut(s) 258, 595
BspANI GGCC 1 cut(s) 242
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 597
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 2 cut(s) 590, 603
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 258, 595
BssNI GRCGYC 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 106, 304
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 175
BstF5I GGATG 3 cut(s) 430, 573, 622
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 2 cut(s) 261, 598
BstMBI GATC 2 cut(s) 258, 595
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 96, 458
BstUI CGCG 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 430, 573, 622
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 102, 556
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 203
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 253
DpnI GATC 2 cut(s) 260, 597
DpnII GATC 2 cut(s) 258, 595
Eco57I CTGAAG 2 cut(s) 425, 575
Eco88I CYCGRG 2 cut(s) 71, 509
EcoRI GAATTC 1 cut(s) 25
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 254, 320, 473
FatI CATG 1 cut(s) 252
FokI GGATG 3 cut(s) 437, 580, 629
GlaI GCGC 1 cut(s) 453
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 204, 225
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 35, 221, 479
HpaII CCGG 2 cut(s) 204, 225
HphI GGTGA 1 cut(s) 623
Hpy188I TCNGA 4 cut(s) 40, 83, 444, 505
Hpy188III TCNNGA 3 cut(s) 73, 593, 599
HpyAV CCTTC 3 cut(s) 358, 408, 574
HpyCH4III ACNGT 2 cut(s) 106, 304
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 458
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 258, 595
LmnI GCTCC 1 cut(s) 170
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 100, 118
MalI GATC 2 cut(s) 260, 597
MboI GATC 2 cut(s) 258, 595
MboII GAAGA 4 cut(s) 34, 48, 224, 268
MflI RGATCY 1 cut(s) 595
MluCI AATT 4 cut(s) 25, 195, 278, 648
MmeI TCCRAC 4 cut(s) 130, 339, 360, 483
MnlI CCTC 8 cut(s) 34, 277, 304, 328, 337, 511, 550, 558
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 2 cut(s) 204, 225
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 96, 458
NdeII GATC 2 cut(s) 258, 595
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 2 cut(s) 100, 118
NspV TTCGAA 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 35, 221, 479
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 597
PsuI RGATCY 1 cut(s) 595
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 258, 595
Sfr274I CTCGAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 4 cut(s) 25, 195, 278, 648
TaaI ACNGT 2 cut(s) 106, 304
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 29, 72, 290, 306
TasI AATT 4 cut(s) 25, 195, 278, 648
TfiI GAWTC 3 cut(s) 35, 221, 479
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 109, 556
TseFI GTSAC 2 cut(s) 100, 118
Tsp45I GTSAC 2 cut(s) 100, 118
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 2 cut(s) 109, 556
XapI RAATTY 2 cut(s) 25, 278
XhoI CTCGAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.