Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

10587371 .. 10589403

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCTTGCCGGCAAGCTCCCCTCAAGTTGTTCTCGTAAAGATTTAGGCCTTCCAGCTCCAGCCGAGTTAACTCGTCTGGAATCGGCCCCGTCAGCCGGTTCATGGACGCGTCGAGCAGCCGGAGCTTTTTCAACTTCTCTCTCTCTCTGTTGTCGTCGTGCATCCTGGTCGCCTCATCTCCGCCGAGAACGTCGGCGAGTTTCTCAGGGACATCCGACTCGTGTTGCTGAGTGTGGTGGTGTCCGGAGCTTGAGTGACGTCATTCAGGAGGAACTTCGGTTCGAGCTCGAGTTCGTCGACAGCGAGGATTGGACGCTGTGGTGCCAGGCTCAGAGATGGTTTTTTCTTCTACTCTCGCTTGAGCTGCTTGGATTGGCGGCGGTGGGAAGCGCCTCCTCATCTCCGGCTAGGTTTGCAAGTGCTACTAAAGGGGGCAAATTTTTCTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.39

Weight (kDa)

9.55

Isoelectric Point (pI)

72.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	3 cut(s)	181, 377, 380
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	95, 102
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	132
AjnI	CCWGG	2 cut(s)	164, 324
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	16, 56, 125, 249, 286, 364
AluI	AGCT	6 cut(s)	16, 56, 125, 249, 286, 364
Alw21I	GWGCWC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	2 cut(s)	46, 84
ApeKI	GCWGC	2 cut(s)	116, 364
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	128, 351
BccI	CCATC	1 cut(s)	330
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciT130I	CCWGG	2 cut(s)	166, 326
BfaI	CTAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	393
BisI	GCNGC	3 cut(s)	117, 365, 378
BlsI	GCNGC	3 cut(s)	118, 366, 379
Bme1390I	CCNGG	2 cut(s)	166, 326
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	87, 323
BmrFI	CCNGG	2 cut(s)	166, 326
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	3 cut(s)	7, 271, 380
BsaHI	GRCGYC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 102
Bse118I	RCCGGY	2 cut(s)	8, 95
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	166, 326
BseGI	GGATG	2 cut(s)	161, 211
BseLI	CCNNNNNNNGG	2 cut(s)	95, 102
BseMII	CTCAG	3 cut(s)	218, 219, 344
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	128, 351
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	48, 86
BshNI	GGYRCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	9, 96, 120, 244, 404
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	95, 102
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	48, 86
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	243
BspACI	CCGC	3 cut(s)	181, 377, 380
BspANI	GGCC	2 cut(s)	48, 86
BspCNI	CTCAG	3 cut(s)	217, 220, 343
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	87, 323
BspT107I	GGYRCC	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	8, 95
BssAI	RCCGGY	2 cut(s)	8, 95
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	166, 326
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	6, 10, 14
BstDEI	CTNAG	3 cut(s)	204, 228, 330
BstF5I	GGATG	2 cut(s)	161, 211
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 122, 364, 413
BstNI	CCWGG	2 cut(s)	166, 326
BstSCI	CCNGG	2 cut(s)	164, 324
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	128, 351
BsuRI	GGCC	2 cut(s)	48, 86
BtsCI	GGATG	2 cut(s)	161, 211
Cac8I	GCNNGC	3 cut(s)	6, 10, 14
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	2 cut(s)	8, 95
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	3 cut(s)	98, 115, 322
CviAII	CATG	1 cut(s)	102
DdeI	CTNAG	3 cut(s)	204, 228, 330
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	164, 324
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	105
FaiI	YATR	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	117, 365, 378
FokI	GGATG	2 cut(s)	148, 198
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	117, 365, 378
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	117, 365, 378
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	48, 86
HapII	CCGG	5 cut(s)	9, 96, 120, 244, 404
HgaI	GACGC	3 cut(s)	98, 115, 322
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	2 cut(s)	69, 298
HindII	GTYRAC	2 cut(s)	69, 298
HinfI	GANTC	2 cut(s)	80, 217
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	5 cut(s)	9, 96, 120, 244, 404
Hpy166II	GTNNAC	2 cut(s)	69, 298
Hpy188I	TCNGA	2 cut(s)	216, 333
Hpy188III	TCNNGA	3 cut(s)	77, 244, 266
Hpy8I	GTNNAC	2 cut(s)	69, 298
Hpy99I	CGWCG	4 cut(s)	114, 159, 195, 299
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	190, 258
HpyCH4V	TGCA	2 cut(s)	161, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 122, 364, 413
HpyF3I	CTNAG	3 cut(s)	204, 228, 330
HpySE526I	ACGT	2 cut(s)	190, 258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	21, 61, 122, 246
Lsp1109I	GCAGC	2 cut(s)	128, 351
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	190, 258
MaeIII	GTNAC	1 cut(s)	254
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	437
MluI	ACGCGT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	31, 183, 262, 298, 403, 406
MroI	TCCGGA	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	1 cut(s)	68
MspI	CCGG	5 cut(s)	9, 96, 120, 244, 404
MspR9I	CCNGG	2 cut(s)	166, 326
MvaI	CCWGG	2 cut(s)	166, 326
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	4 cut(s)	92, 122, 364, 413
NaeI	GCCGGC	1 cut(s)	10
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	87, 323
NmeAIII	GCCGAG	2 cut(s)	88, 209
NmuCI	GTSAC	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 300
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	118, 366, 379
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	164, 324
PspGI	CCWGG	2 cut(s)	164, 324
PspN4I	GGNNCC	2 cut(s)	87, 323
PspPI	GGNCC	1 cut(s)	85
PspXI	VCTCGAGB	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	117, 365, 378
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	166, 326
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	18, 58, 127, 193, 251, 261, 288, 366, 413
SfaNI	GCATC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	4 cut(s)	22, 250, 287, 359
SmoI	CTYRAG	4 cut(s)	22, 250, 287, 359
Sse9I	AATT	1 cut(s)	437
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	3 cut(s)	181, 377, 380
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	164, 324
TaiI	ACGT	2 cut(s)	193, 261
TaqI	TCGA	4 cut(s)	112, 282, 288, 297
TasI	AATT	1 cut(s)	437
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	116, 364
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	90
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	408
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.