Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004942.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

49390 .. 50958

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004942.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgactaagcttacaagttgttttcccactgttgtattcatttttctgcatattctataccaatcatttgcttttggtgatgagacgactacgaggacttatgatgttctgaagtttggagctaagcgcaatggtgtaaccaattcaacccaagcttttcttgatgcttggtctgcagactgtggctctgccgcagataccactgagatatatgtgccaaaaggggagagcactcgccaagggctcttccttgtggggaaattaagtagcgaaagcagcaattgccctaatggagccacgactttgagttttacaaactccaaggacattagagctgaaggactaatgtcactaaacagccaaatgtttcacattgtgataaacggctgccgagatgtactcattcaaagcgtcaaagtcattgccgctggaaatagcccaaacactgatggcatccatgtccagttttccagaaatgttgcaatcttcgacacctccatcaaaactggggacgattgtgtctctattggccccggcaccaaggaattgtggatggaacgcatatcatgcggacctggccatggcattagcatagggagtttggccaaagacttggaagaggaaggaatccaaaatgtaacactgaaaaatgcgattttcaagggaactacaaatggtctcaggataaagtcctgggcaagacccagcaccgggtttgtgcaaggtgtccgatcccttgatgttgaaatgattaatgtccaaaaccccattgtaatttaccagaattactgcccacacaacctcaactgtcctggtcaggtatcagatgtcaaagttaacgacgtgttgtaccagaacattcgggggacatcagcaacagcagtcgccataaaatttgattttagtgcagcaaatccatgcagtggagtgaaactcgacaacgtgcatttgacttgccggaagcaagtggtacaatcagattgtaccaatgtaaatgtaaagagtgttggcactgtgcaaccaagcagttgtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

345

Amino Acids

37.23

Weight (kDa)

7.49

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	923
AciI	CCGC	3 cut(s)	192, 426, 570
AclWI	GGATC	1 cut(s)	726
AcoI	YGGCCR	2 cut(s)	577, 603
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	2 cut(s)	131, 357
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	4 cut(s)	399, 851, 972, 985
AfiI	CCNNNNNNNGG	4 cut(s)	581, 710, 711, 923
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	4 cut(s)	147, 407, 661, 746
AjiI	CACGTC	1 cut(s)	844
AjnI	CCWGG	3 cut(s)	574, 692, 811
AluBI	AGCT	4 cut(s)	10, 122, 155, 335
AluI	AGCT	4 cut(s)	10, 122, 155, 335
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	3 cut(s)	77, 526, 683
AlwI	GGATC	1 cut(s)	726
AoxI	GGCC	3 cut(s)	529, 577, 603
ApeKI	GCWGC	3 cut(s)	276, 387, 908
ApoI	RAATTY	1 cut(s)	893
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	530, 572
AsuC2I	CCSGG	2 cut(s)	534, 712
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	572
BalI	TGGCCA	2 cut(s)	579, 605
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	288, 374, 920
BccI	CCATC	3 cut(s)	443, 506, 547
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	3 cut(s)	576, 694, 813
BcnI	CCSGG	2 cut(s)	534, 712
BcoDI	GTCTC	3 cut(s)	77, 526, 683
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	5 cut(s)	192, 277, 388, 426, 909
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	5 cut(s)	193, 278, 389, 427, 910
Bme1390I	CCNGG	5 cut(s)	534, 576, 694, 712, 813
Bme18I	GGWCC	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	844
BmgT120I	GGNCC	2 cut(s)	530, 572
BmiI	GGNNCC	3 cut(s)	295, 532, 538
BmrFI	CCNGG	5 cut(s)	534, 576, 694, 712, 813
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	154, 462
BmuI	ACTGGG	1 cut(s)	516
BoxI	GACNNNNGTC	1 cut(s)	346
BplI	GAGNNNNNCTC	4 cut(s)	384, 416, 918, 950
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	534, 712
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	6 cut(s)	238, 321, 532, 540, 580, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	581, 710, 711, 923
Bse1I	ACTGG	2 cut(s)	463, 511
Bse3DI	GCAATG	2 cut(s)	136, 420
BseBI	CCWGG	3 cut(s)	576, 694, 813
BseDI	CCNNGG	6 cut(s)	238, 321, 532, 540, 580, 693
BseGI	GGATG	2 cut(s)	453, 558
BseLI	CCNNNNNNNGG	4 cut(s)	581, 710, 711, 923
BseMI	GCAATG	2 cut(s)	136, 420
BseMII	CTCAG	2 cut(s)	195, 694
BseNI	ACTGG	2 cut(s)	463, 511
BseXI	GCAGC	3 cut(s)	288, 374, 920
BseYI	CCCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	3 cut(s)	531, 579, 605
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	534, 711, 958
BslFI	GGGAC	2 cut(s)	524, 880
BslI	CCNNNNNNNGG	4 cut(s)	581, 710, 711, 923
BsmAI	GTCTC	3 cut(s)	77, 526, 683
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	524, 880
BsnI	GGCC	3 cut(s)	531, 579, 605
Bso31I	GGTCTC	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	233, 246
Bsp143I	GATC	1 cut(s)	731
Bsp1720I	GCTNAGC	1 cut(s)	123
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	3 cut(s)	192, 426, 570
BspANI	GGCC	3 cut(s)	531, 579, 605
BspCNI	CTCAG	2 cut(s)	196, 693
BspLI	GGNNCC	3 cut(s)	295, 532, 538
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	726
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	136, 420
BsrI	ACTGG	2 cut(s)	463, 511
BssECI	CCNNGG	6 cut(s)	238, 321, 532, 540, 580, 693
BssMI	GATC	1 cut(s)	731
BssT1I	CCWWGG	4 cut(s)	238, 321, 540, 580
Bst2UI	CCWGG	3 cut(s)	576, 694, 813
Bst4CI	ACNGT	4 cut(s)	31, 182, 809, 1015
Bst6I	CTCTTC	2 cut(s)	251, 612
BstAPI	GCANNNNNTGC	2 cut(s)	282, 567
BstDEI	CTNAG	4 cut(s)	6, 123, 204, 680
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	453, 558
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	734
BstMAI	GTCTC	3 cut(s)	77, 526, 683
BstMBI	GATC	1 cut(s)	731
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 276, 282, 567, 576
BstNI	CCWGG	3 cut(s)	576, 694, 813
BstPAI	GACNNNNGTC	1 cut(s)	346
BstSCI	CCNGG	5 cut(s)	532, 574, 692, 710, 811
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	288, 374, 920
BstXI	CCANNNNNNTGG	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	531, 579, 605
BtgI	CCRYGG	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	453, 558
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	6 cut(s)	27, 201, 444, 641, 928, 1011
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	530, 572
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	4 cut(s)	398, 850, 971, 984
CviAII	CATG	4 cut(s)	458, 567, 581, 918
CviQI	GTAC	4 cut(s)	398, 850, 971, 984
DdeI	CTNAG	4 cut(s)	6, 123, 204, 680
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
DraIII	CACNNNGTG	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
EaeI	YGGCCR	2 cut(s)	577, 603
Eam1104I	CTCTTC	2 cut(s)	251, 612
EarI	CTCTTC	2 cut(s)	251, 612
Eco130I	CCWWGG	4 cut(s)	238, 321, 540, 580
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	131, 357
EcoRII	CCWGG	3 cut(s)	574, 692, 811
EcoT14I	CCWWGG	4 cut(s)	238, 321, 540, 580
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	4 cut(s)	238, 321, 540, 580
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	461, 570, 584, 921
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	2 cut(s)	524, 880
FatI	CATG	4 cut(s)	457, 566, 580, 917
Fnu4HI	GCNGC	5 cut(s)	192, 277, 388, 426, 909
FokI	GGATG	2 cut(s)	440, 565
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	5 cut(s)	192, 277, 388, 426, 909
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	5 cut(s)	192, 277, 388, 426, 909
GsaI	CCCAGC	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	531, 579, 605
HapII	CCGG	3 cut(s)	534, 711, 958
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	461, 570, 584, 921
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HindIII	AAGCTT	2 cut(s)	8, 153
HinfI	GANTC	1 cut(s)	627
HpaI	GTTAAC	1 cut(s)	838
HpaII	CCGG	3 cut(s)	534, 711, 958
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	4 cut(s)	111, 731, 826, 979
Hpy188III	TCNNGA	3 cut(s)	161, 471, 682
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	2 cut(s)	332, 617
HpyCH4III	ACNGT	4 cut(s)	31, 182, 809, 1015
HpyCH4IV	ACGT	2 cut(s)	843, 942
HpyCH4V	TGCA	8 cut(s)	49, 176, 482, 721, 908, 921, 946, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 276, 282, 567, 576
HpyF3I	CTNAG	4 cut(s)	6, 123, 204, 680
HpySE526I	ACGT	2 cut(s)	843, 942
Hsp92II	CATG	4 cut(s)	461, 570, 584, 921
HspAI	GCGC	1 cut(s)	127
KspAI	GTTAAC	1 cut(s)	838
Kzo9I	GATC	1 cut(s)	731
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	119, 293
Lsp1109I	GCAGC	3 cut(s)	288, 374, 920
LweI	GCATC	2 cut(s)	154, 462
MaeII	ACGT	2 cut(s)	843, 942
MaeIII	GTNAC	3 cut(s)	136, 348, 637
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	3 cut(s)	238, 478, 629
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	233, 246
MlsI	TGGCCA	2 cut(s)	579, 605
MluCI	AATT	7 cut(s)	142, 260, 280, 545, 774, 784, 893
MluNI	TGGCCA	2 cut(s)	579, 605
MnlI	CCTC	4 cut(s)	87, 505, 613, 812
Mox20I	TGGCCA	2 cut(s)	579, 605
MscI	TGGCCA	2 cut(s)	579, 605
MseI	TTAA	3 cut(s)	263, 753, 837
Msp20I	TGGCCA	2 cut(s)	579, 605
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	3 cut(s)	534, 711, 958
MspR9I	CCNGG	5 cut(s)	534, 576, 694, 712, 813
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	576, 694, 813
MwoI	GCNNNNNNNGC	5 cut(s)	173, 276, 282, 567, 576
NciI	CCSGG	2 cut(s)	534, 712
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	1 cut(s)	731
NlaIII	CATG	4 cut(s)	461, 570, 584, 921
NlaIV	GGNNCC	3 cut(s)	295, 532, 538
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	627
PflMI	CCANNNNNTGG	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	193, 278, 389, 427, 910
PshAI	GACNNNNGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	3 cut(s)	574, 692, 811
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	3 cut(s)	574, 692, 811
PspN4I	GGNNCC	3 cut(s)	295, 532, 538
PspPI	GGNCC	2 cut(s)	530, 572
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	4 cut(s)	399, 851, 972, 985
RsaNI	GTAC	4 cut(s)	398, 850, 971, 984
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	263, 753, 837
SatI	GCNGC	5 cut(s)	192, 277, 388, 426, 909
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	2 cut(s)	530, 572
ScrFI	CCNGG	5 cut(s)	534, 576, 694, 712, 813
SduI	GDGCHC	2 cut(s)	233, 246
SfaNI	GCATC	2 cut(s)	154, 462
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	572
Sse9I	AATT	7 cut(s)	142, 260, 280, 545, 774, 784, 893
SsiI	CCGC	3 cut(s)	192, 426, 570
StyD4I	CCNGG	5 cut(s)	532, 574, 692, 710, 811
StyI	CCWWGG	4 cut(s)	238, 321, 540, 580
TaaI	ACNGT	4 cut(s)	31, 182, 809, 1015
TaiI	ACGT	2 cut(s)	846, 945
TaqI	TCGA	2 cut(s)	489, 936
TasI	AATT	7 cut(s)	142, 260, 280, 545, 774, 784, 893
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	2 cut(s)	194, 428
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	263, 753, 837
Tru9I	TTAA	3 cut(s)	263, 753, 837
TscAI	CASTG	6 cut(s)	34, 208, 451, 648, 928, 1018
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	3 cut(s)	276, 387, 908
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	6 cut(s)	34, 208, 451, 648, 928, 1018
Van91I	CCANNNNNTGG	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.