Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8398115.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1225

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8398115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ggtgtaacggattccacccaagcttttcttgatgcttgggctgctacctgtggagcctccgcggattcatctgagatatatgtaccgaaggggaggtatttgcttggcgctatagcctttaaaggtgactgcaaaagctcacatgtcacttttcggattgatggaacactcgtggcttcgcctgattaccgagtactaggccaagctaataactggttcagttttgaaggagttactggggtaaacattgttggaggagcacttgatgctaagggttccgccttgtgggcttgcaaattaagtaccgaaaccaccagctgtcctaatggagccacggatgtactcattcgaggcgtcaaaattattgctgctggcaatagccctaacaccgacggcattcatgtccaattttccaaaaatgttgcaatcttcgacacctccttcaaaactggggacgactgtgtctccattggccctgggaccaaggacttgtggatggaacgcatatcatgcggacctggccacggcattagtatagggagcctagccaaagacttggaagaggaaggagtacaaaacgtaacagttaaaaatgcaacttttaagggtaccacaaatgggctgaggatcaaatcttgggcgagacctagcaccgggtttgtccaaggtgttagattccttgatgtcgtaatgcttaatgtccaaaatcccatcgtaattgaccagaattactgcccacacaacctcaactgtcctggtaaggtaagaaagtatctggtgtcaaagtcagcgatgtactgtaccagaacattcgaggcacatcgacaacagcagttgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

280

Amino Acids

29.99

Weight (kDa)

8.35

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc65I	GGTACC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	608
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 62, 279, 513
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	8 cut(s)	84, 195, 304, 342, 573, 610, 797, 802
AfiI	CCNNNNNNNGG	4 cut(s)	285, 524, 618, 653
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	227, 445
AjnI	CCWGG	3 cut(s)	475, 517, 754
AluBI	AGCT	4 cut(s)	23, 138, 206, 318
AluI	AGCT	4 cut(s)	23, 138, 206, 318
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	469, 637
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	3 cut(s)	199, 472, 520
ApeKI	GCWGC	2 cut(s)	41, 368
Asp718I	GGTACC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	473, 480, 515
AsuC2I	CCSGG	1 cut(s)	655
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	480, 515
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	28, 355
BccI	CCATC	3 cut(s)	155, 490, 719
BceAI	ACGGC	2 cut(s)	409, 541
BciT130I	CCWGG	3 cut(s)	477, 519, 756
BcnI	CCSGG	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	469, 637
BfaI	CTAG	3 cut(s)	197, 545, 648
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	2 cut(s)	42, 369
BlsI	GCNGC	2 cut(s)	43, 370
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	4 cut(s)	477, 519, 655, 756
Bme18I	GGWCC	2 cut(s)	480, 515
BmgT120I	GGNCC	3 cut(s)	473, 480, 515
BmiI	GGNNCC	6 cut(s)	55, 277, 331, 481, 542, 610
BmrFI	CCNGG	4 cut(s)	477, 519, 655, 756
BmrI	ACTGGG	2 cut(s)	246, 459
BmsI	GCATC	2 cut(s)	22, 256
BmuI	ACTGGG	2 cut(s)	246, 459
Bpu10I	CCTNAGC	2 cut(s)	270, 623
BpuMI	CCSGG	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	7 cut(s)	60, 333, 475, 476, 483, 523, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 524, 618, 653
Bse1I	ACTGG	3 cut(s)	218, 241, 454
BseBI	CCWGG	3 cut(s)	477, 519, 756
BseDI	CCNNGG	7 cut(s)	60, 333, 475, 476, 483, 523, 664
BseGI	GGATG	2 cut(s)	343, 501
BseLI	CCNNNNNNNGG	4 cut(s)	285, 524, 618, 653
BseMII	CTCAG	2 cut(s)	63, 614
BseNI	ACTGG	3 cut(s)	218, 241, 454
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	28, 355
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	201, 474, 522
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	467, 493
BslI	CCNNNNNNNGG	4 cut(s)	285, 524, 618, 653
BsmAI	GTCTC	2 cut(s)	469, 637
BsmFI	GGGAC	2 cut(s)	467, 493
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	201, 474, 522
Bso31I	GGTCTC	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	627
BspACI	CCGC	4 cut(s)	60, 62, 279, 513
BspANI	GGCC	3 cut(s)	201, 474, 522
BspCNI	CTCAG	2 cut(s)	64, 615
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	6 cut(s)	55, 277, 331, 481, 542, 610
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	218, 241, 454
BssECI	CCNNGG	7 cut(s)	60, 333, 475, 476, 483, 523, 664
BssMI	GATC	1 cut(s)	627
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	483, 664
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	3 cut(s)	477, 519, 756
Bst4CI	ACNGT	4 cut(s)	461, 586, 752, 800
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	354
BstAPI	GCANNNNNTGC	2 cut(s)	266, 510
BstC8I	GCNNGC	2 cut(s)	292, 373
BstDEI	CTNAG	3 cut(s)	72, 270, 623
BstDSI	CCRYGG	3 cut(s)	60, 333, 523
BstF5I	GGATG	2 cut(s)	343, 501
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	630
BstMAI	GTCTC	2 cut(s)	469, 637
BstMBI	GATC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 266, 287, 510, 519
BstNI	CCWGG	3 cut(s)	477, 519, 756
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	475, 517, 653, 754
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	28, 355
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	201, 474, 522
BtgI	CCRYGG	3 cut(s)	60, 333, 523
BtgZI	GCGATG	1 cut(s)	806
BtsCI	GGATG	2 cut(s)	343, 501
Cac8I	GCNNGC	2 cut(s)	292, 373
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	473, 480, 515
Cfr42I	CCGCGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	8 cut(s)	83, 194, 303, 341, 572, 609, 796, 801
CviAII	CATG	3 cut(s)	143, 401, 510
CviQI	GTAC	8 cut(s)	83, 194, 303, 341, 572, 609, 796, 801
DdeI	CTNAG	3 cut(s)	72, 270, 623
DpnI	GATC	1 cut(s)	629
DpnII	GATC	1 cut(s)	627
DraI	TTTAAA	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	2 cut(s)	483, 664
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	480, 515
EcoRII	CCWGG	3 cut(s)	475, 517, 754
EcoT14I	CCWWGG	2 cut(s)	483, 664
ErhI	CCWWGG	2 cut(s)	483, 664
FaeI	CATG	3 cut(s)	146, 404, 513
FaiI	YATR	8 cut(s)	79, 81, 113, 144, 402, 506, 511, 536
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	467, 493
FatI	CATG	3 cut(s)	142, 400, 509
Fnu4HI	GCNGC	2 cut(s)	42, 369
FokI	GGATG	2 cut(s)	350, 508
Fsp4HI	GCNGC	2 cut(s)	42, 369
FspBI	CTAG	3 cut(s)	197, 545, 648
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	42, 369
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	201, 474, 522
HapII	CCGG	1 cut(s)	654
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	146, 404, 513
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	11, 65, 675
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	73, 156
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	4 cut(s)	82, 221, 451, 560
HpyCH4III	ACNGT	4 cut(s)	461, 586, 752, 800
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	132, 294, 425, 596, 838
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 266, 287, 510, 519
HpyF3I	CTNAG	3 cut(s)	72, 270, 623
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	146, 404, 513
HspAI	GCGC	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	612
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	627
LmnI	GCTCC	4 cut(s)	53, 257, 329, 540
Lsp1109I	GCAGC	2 cut(s)	28, 355
LweI	GCATC	2 cut(s)	22, 256
MaeI	CTAG	3 cut(s)	197, 545, 648
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	5 cut(s)	4, 125, 145, 232, 580
MalI	GATC	1 cut(s)	629
MboI	GATC	1 cut(s)	627
MboII	GAAGA	2 cut(s)	421, 572
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	5 cut(s)	296, 360, 407, 717, 727
MluNI	TGGCCA	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	9 cut(s)	67, 87, 248, 344, 448, 556, 618, 755, 808
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	5 cut(s)	120, 299, 588, 603, 696
Msp20I	TGGCCA	1 cut(s)	522
MspA1I	CMGCKG	2 cut(s)	62, 318
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	4 cut(s)	477, 519, 655, 756
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	3 cut(s)	477, 519, 756
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	41, 266, 287, 510, 519
NciI	CCSGG	1 cut(s)	655
NdeII	GATC	1 cut(s)	627
NlaIII	CATG	3 cut(s)	146, 404, 513
NlaIV	GGNNCC	6 cut(s)	55, 277, 331, 481, 542, 610
NmuCI	GTSAC	2 cut(s)	125, 145
NspI	RCATGY	1 cut(s)	146
PasI	CCCWGGG	1 cut(s)	476
PciI	ACATGT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	11, 65, 675
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	43, 370
PscI	ACATGT	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	475, 517, 754
PspGI	CCWGG	3 cut(s)	475, 517, 754
PspN4I	GGNNCC	6 cut(s)	55, 277, 331, 481, 542, 610
PspPI	GGNCC	3 cut(s)	473, 480, 515
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	318
RsaI	GTAC	8 cut(s)	84, 195, 304, 342, 573, 610, 797, 802
RsaNI	GTAC	8 cut(s)	83, 194, 303, 341, 572, 609, 796, 801
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	5 cut(s)	120, 299, 588, 603, 696
SatI	GCNGC	2 cut(s)	42, 369
Sau3AI	GATC	1 cut(s)	627
Sau96I	GGNCC	3 cut(s)	473, 480, 515
ScaI	AGTACT	1 cut(s)	195
ScrFI	CCNGG	4 cut(s)	477, 519, 655, 756
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	22, 256
SfcI	CTRYAG	1 cut(s)	111
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	480, 515
Sse9I	AATT	5 cut(s)	296, 360, 407, 717, 727
SsiI	CCGC	4 cut(s)	60, 62, 279, 513
SspMI	CTAG	3 cut(s)	197, 545, 648
StyD4I	CCNGG	4 cut(s)	475, 517, 653, 754
StyI	CCWWGG	2 cut(s)	483, 664
TaaI	ACNGT	4 cut(s)	461, 586, 752, 800
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	4 cut(s)	349, 432, 813, 823
TasI	AATT	5 cut(s)	296, 360, 407, 717, 727
TatI	WGTACW	4 cut(s)	193, 340, 571, 795
TfiI	GAWTC	3 cut(s)	11, 65, 675
Tru1I	TTAA	5 cut(s)	120, 299, 588, 603, 696
Tru9I	TTAA	5 cut(s)	120, 299, 588, 603, 696
TseFI	GTSAC	2 cut(s)	125, 145
TseI	GCWGC	2 cut(s)	41, 368
Tsp45I	GTSAC	2 cut(s)	125, 145
TspDTI	ATGAA	2 cut(s)	57, 389
TspGWI	ACGGA	2 cut(s)	23, 350
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	480, 515
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	3 cut(s)	197, 545, 648
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.