Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465195.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

410 .. 1880

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggtgcagctaacaagttgtttttgcacacttgcattcattcttctacatatcttataccagccatctatcgctgctgctgctgatgagaccgcaactatttacagtgtcttaagctttggagctaaacgcaatggagtaactgattcaacccaagcttttcttgatgcatgggctgctgcctgtgcctccctagattcagccgagataaatgtaccaaaagggaggtatttgctcaactctatgacctttaaaggtgactgcaagagcgcacagattactttccggattgatggaacgcttgtagcttcacctgattaccgagtcctaggccaagccaacaattggcttggttttgaaggagtcagcggggtaaccattatcggaggaacacttgacgccaagggttctgcattgtgggcttgcaaattgagctccaaagcctccacttgtcctgatggcgccacgagtttgagttttacgaactccaaaaacattagagtcgaggggctaatgtcattgaacagccagatgtaccacattgtcataaacggctgccaagatgttctcattcaaggcgtcaaagtcattgctgctcgcaatagcccaaacaccgatggcatccatgtccagttctcgaaaaatgttgcaatcttcgacacctccatcaaaactggggacgattgtgtctctattggtcccggcaccaaggacttatggatggaacacatatcatgcggtcctggccacggcattagcattgggagcctagccaaggacttggaagaggaaggggtacaaaatgtaacggtcaaaaatgcgatttttaagggcacccaaaatggtgtgaggataaagtcttgggcgagacgtagcaacgggtttgtccaaggtgtccaatttcttgacgttgaaatggttgatgttcaaaaccctattgtaattgaccaaaattactgcccacacaaccttaactgccctgctcaggtatcaggcgtgaaaattagtgatgtattgtatcaaaacattcgaggaacatcagcaacagcagtcgcagtaaaatttgcttgtagtgcagcaaatccttgcagtgggataagactcaaaaacgtgaatctggcttgccggaatcaagctgtgcaatcatattgtacgaatgcaatcggaaaggcttacggcactgttcaaccaaacagttgtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

401

Amino Acids

42.66

Weight (kDa)

8.09

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
AccB1I	GGYRCC	3 cut(s)	461, 704, 833
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	3 cut(s)	93, 369, 738
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	1 cut(s)	1061
AcyI	GRCGYC	3 cut(s)	399, 462, 579
AfaI	GTAC	4 cut(s)	216, 536, 798, 1153
AfiI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	7 cut(s)	150, 359, 523, 575, 914, 929, 1187
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	7 cut(s)	10, 117, 125, 158, 308, 435, 1136
AluI	AGCT	7 cut(s)	10, 117, 125, 158, 308, 435, 1136
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	3 cut(s)	83, 694, 862
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	2 cut(s)	331, 745
ApeKI	GCWGC	9 cut(s)	7, 74, 77, 80, 176, 179, 555, 593, 1076
ApoI	RAATTY	1 cut(s)	1061
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	272, 464
AspS9I	GGNCC	2 cut(s)	698, 740
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	269, 303
AvaII	GGWCC	2 cut(s)	698, 740
AvrII	CCTAGG	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	747
BanI	GGYRCC	3 cut(s)	461, 704, 833
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	9 cut(s)	19, 61, 64, 67, 163, 166, 542, 580, 1088
BccI	CCATC	6 cut(s)	73, 287, 452, 611, 674, 715
BceAI	ACGGC	3 cut(s)	568, 766, 1192
BciT130I	CCWGG	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	3 cut(s)	83, 694, 862
BfaI	CTAG	3 cut(s)	194, 329, 770
BfoI	RGCGCY	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	9 cut(s)	8, 75, 78, 81, 177, 180, 556, 594, 1077
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	9 cut(s)	9, 76, 79, 82, 178, 181, 557, 595, 1078
Bme1390I	CCNGG	2 cut(s)	702, 744
Bme18I	GGWCC	2 cut(s)	698, 740
BmgT120I	GGNCC	2 cut(s)	698, 740
BmiI	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
BmrFI	CCNGG	2 cut(s)	702, 744
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	157, 630
BmuI	ACTGGG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	702
BsaHI	GRCGYC	3 cut(s)	399, 462, 579
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
Bse1I	ACTGG	2 cut(s)	631, 679
Bse3DI	GCAATG	2 cut(s)	139, 588
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BseGI	GGATG	2 cut(s)	621, 726
BseLI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
BseMI	GCAATG	2 cut(s)	139, 588
BseMII	CTCAG	1 cut(s)	998
BseNI	ACTGG	2 cut(s)	631, 679
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	9 cut(s)	19, 61, 64, 67, 163, 166, 542, 580, 1088
BsgI	GTGCAG	2 cut(s)	26, 1095
BshFI	GGCC	2 cut(s)	333, 747
BshNI	GGYRCC	3 cut(s)	461, 704, 833
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	3 cut(s)	286, 702, 1126
BslFI	GGGAC	2 cut(s)	684, 692
BslI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
BsmAI	GTCTC	3 cut(s)	83, 694, 862
BsmBI	CGTCTC	1 cut(s)	862
BsmFI	GGGAC	2 cut(s)	684, 692
BsmI	GAATGC	2 cut(s)	35, 1162
BsnI	GGCC	2 cut(s)	333, 747
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	437, 836
Bsp13I	TCCGGA	1 cut(s)	285
BspACI	CCGC	3 cut(s)	93, 369, 738
BspANI	GGCC	2 cut(s)	333, 747
BspCNI	CTCAG	1 cut(s)	997
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
BspT107I	GGYRCC	3 cut(s)	461, 704, 833
BspTI	CTTAAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	139, 588
BsrI	ACTGG	2 cut(s)	631, 679
BssECI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BssNI	GRCGYC	3 cut(s)	399, 462, 579
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	4 cut(s)	107, 811, 1183, 1196
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	3 cut(s)	399, 462, 579
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	424, 598, 1123
BstDEI	CTNAG	1 cut(s)	984
BstDSI	CCRYGG	1 cut(s)	748
BstEII	GGTNACC	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	2 cut(s)	621, 726
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	272, 464
BstMAI	GTCTC	3 cut(s)	83, 694, 862
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
BstNI	CCWGG	1 cut(s)	744
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	700, 742
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	9 cut(s)	19, 61, 64, 67, 163, 166, 542, 580, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	333, 747
BtgI	CCRYGG	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	621, 726
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	3 cut(s)	112, 1096, 1179
Cac8I	GCNNGC	3 cut(s)	424, 598, 1123
CfoI	GCGC	2 cut(s)	272, 464
Cfr13I	GGNCC	2 cut(s)	698, 740
CseI	GACGC	2 cut(s)	407, 568
Csp6I	GTAC	4 cut(s)	215, 535, 797, 1152
CviAII	CATG	3 cut(s)	171, 626, 735
CviQI	GTAC	4 cut(s)	215, 535, 797, 1152
DdeI	CTNAG	1 cut(s)	984
DinI	GGCGCC	1 cut(s)	463
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Ecl136II	GAGCTC	1 cut(s)	435
Eco130I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	698, 740
Eco53kI	GAGCTC	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Esp3I	CGTCTC	1 cut(s)	862
FaeI	CATG	3 cut(s)	174, 629, 738
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	684, 692
FatI	CATG	3 cut(s)	170, 625, 734
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	9 cut(s)	8, 75, 78, 81, 177, 180, 556, 594, 1077
FokI	GGATG	2 cut(s)	608, 733
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	9 cut(s)	8, 75, 78, 81, 177, 180, 556, 594, 1077
FspBI	CTAG	3 cut(s)	194, 329, 770
GlaI	GCGC	2 cut(s)	271, 463
GluI	GCNGC	9 cut(s)	8, 75, 78, 81, 177, 180, 556, 594, 1077
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	333, 747
HapII	CCGG	3 cut(s)	286, 702, 1126
HgaI	GACGC	2 cut(s)	407, 568
HhaI	GCGC	2 cut(s)	272, 464
Hin1I	GRCGYC	3 cut(s)	399, 462, 579
Hin1II	CATG	3 cut(s)	174, 629, 738
Hin6I	GCGC	2 cut(s)	270, 462
HinP1I	GCGC	2 cut(s)	270, 462
HindIII	AAGCTT	2 cut(s)	115, 156
HinfI	GANTC	8 cut(s)	146, 197, 324, 363, 501, 1101, 1114, 1129
HpaII	CCGG	3 cut(s)	286, 702, 1126
HphI	GGTGA	2 cut(s)	269, 303
Hpy188I	TCNGA	2 cut(s)	386, 1166
Hpy188III	TCNNGA	5 cut(s)	164, 286, 455, 637, 905
HpyAV	CCTTC	2 cut(s)	353, 785
HpyCH4III	ACNGT	4 cut(s)	107, 811, 1183, 1196
HpyCH4IV	ACGT	3 cut(s)	871, 909, 1110
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
HpyF3I	CTNAG	1 cut(s)	984
HpySE526I	ACGT	3 cut(s)	871, 909, 1110
Hsp92I	GRCGYC	3 cut(s)	399, 462, 579
Hsp92II	CATG	3 cut(s)	174, 629, 738
HspAI	GCGC	2 cut(s)	270, 462
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	122, 440, 765
Lsp1109I	GCAGC	9 cut(s)	19, 61, 64, 67, 163, 166, 542, 580, 1088
LweI	GCATC	2 cut(s)	157, 630
MaeI	CTAG	3 cut(s)	194, 329, 770
MaeII	ACGT	3 cut(s)	871, 909, 1110
MaeIII	GTNAC	4 cut(s)	139, 257, 373, 805
MboII	GAAGA	3 cut(s)	35, 646, 797
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	437, 836
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	7 cut(s)	343, 428, 899, 942, 952, 1002, 1061
MluNI	TGGCCA	1 cut(s)	747
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	4 cut(s)	333, 372, 510, 1095
MnlI	CCTC	9 cut(s)	199, 219, 380, 454, 499, 673, 781, 843, 1025
Mox20I	TGGCCA	1 cut(s)	747
Mph1103I	ATGCAT	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	4 cut(s)	113, 252, 828, 972
Msp20I	TGGCCA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	369
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	3 cut(s)	286, 702, 1126
MspR9I	CCNGG	2 cut(s)	702, 744
MunI	CAATTG	1 cut(s)	343
Mva1269I	GAATGC	2 cut(s)	35, 1162
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	702
NlaIII	CATG	3 cut(s)	174, 629, 738
NlaIV	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	172
PctI	GAATGC	2 cut(s)	35, 1162
PfeI	GAWTC	4 cut(s)	146, 197, 1114, 1129
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	9 cut(s)	9, 76, 79, 82, 178, 181, 557, 595, 1078
PleI	GAGTC	4 cut(s)	332, 371, 509, 1095
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	4 cut(s)	332, 371, 509, 1095
Psp124BI	GAGCTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	742
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
PspPI	GGNCC	2 cut(s)	698, 740
RsaI	GTAC	4 cut(s)	216, 536, 798, 1153
RsaNI	GTAC	4 cut(s)	215, 535, 797, 1152
SacI	GAGCTC	1 cut(s)	437
SaqAI	TTAA	4 cut(s)	113, 252, 828, 972
SatI	GCNGC	9 cut(s)	8, 75, 78, 81, 177, 180, 556, 594, 1077
Sau96I	GGNCC	2 cut(s)	698, 740
SchI	GAGTC	4 cut(s)	333, 372, 510, 1095
ScrFI	CCNGG	2 cut(s)	702, 744
SduI	GDGCHC	2 cut(s)	437, 836
SfaNI	GCATC	2 cut(s)	157, 630
SfoI	GGCGCC	1 cut(s)	463
SinI	GGWCC	2 cut(s)	698, 740
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	7 cut(s)	343, 428, 899, 942, 952, 1002, 1061
SsiI	CCGC	3 cut(s)	93, 369, 738
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	3 cut(s)	194, 329, 770
SstI	GAGCTC	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	700, 742
StyI	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
TaaI	ACNGT	4 cut(s)	107, 811, 1183, 1196
TaiI	ACGT	3 cut(s)	874, 912, 1113
TaqI	TCGA	4 cut(s)	504, 638, 657, 1030
TasI	AATT	7 cut(s)	343, 428, 899, 942, 952, 1002, 1061
TfiI	GAWTC	4 cut(s)	146, 197, 1114, 1129
Tru1I	TTAA	4 cut(s)	113, 252, 828, 972
Tru9I	TTAA	4 cut(s)	113, 252, 828, 972
TscAI	CASTG	3 cut(s)	112, 1096, 1186
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	9 cut(s)	7, 74, 77, 80, 176, 179, 555, 593, 1076
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	3 cut(s)	112, 1096, 1186
Van91I	CCANNNNNTGG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	698, 740
XagI	CCTNNNNNAGG	1 cut(s)	773
XapI	RAATTY	1 cut(s)	1061
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	3 cut(s)	194, 329, 770
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.