Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

29246564 .. 29247881

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGCTGCTGCCTGTGCCTCCCCAGATTCAGCCTAGATAAATGTACCAAAAGGGAGATTGATGGAACGCTTGTAGCTTCACCTGATTACCGAGTCCTAGGCCAAGCCAACAATTGGCTCGGTTTTGAAGGAGTCAGCGGGGTAACCATTATTGGAGGAACACTTGACGCCAAGGGTTCTGCATTGTGGGCTTGCAAATTGAGCACCAAAGCCTCCAATTGTCCTGATGGCGCCACGGGTTTGAGTTTTACGAACTCCAAAAACATTAGAGTCGAGGGGCTAATGTCATTGAACAGCCACATGTACCACATTGTCATAAACGGCTGCCAAGACGTTCTCATTCAAGGCGTCAAAGTCATTGCTGCTGGCAATAGCCCAAACAGCGATGGCATCCATGTCCAGTTCTCGAAGTTCATTGGGAGCCTAGCCAAGGACTTGGAAGAGGAAGGGGTACAAAATGTAACGGTCAAAAATGCGATTTTTAAGGGCACCCAGAATGGTGTGAGGATAAAATCTTGGGCGAGACGTAGCAACGGGTTTGTCCAAGGTGTCCAATTTCTTGACGTTGAAATGATTGATGTCCAAAACCCTATTGTAATTGACCAAAATTACTGCCCACACAACCTTAACTGCCCTGCTCAGGTATCAGGTGTGAAAATTAGTGATGTATTGTATCAAAACATTCGAGGAACATCAGCAACAGCGGTTGCAGTAAAATTCACTTGTAGTGCAGCAAATCCATGCAGTGGGATAAGACTTGAAAACGTAAATTTGGCTTGTCGGAATCAAGTGGTGGAATCGTATTGTACAAATGCAATCGGAAAGACTTTCGGCACTGTTCAACCTACGAGTTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

286

Amino Acids

30.59

Weight (kDa)

8.36

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	20 - 138	9.3e-18	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	139 - 271	2.3e-34	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	859
AccB1I	GGYRCC	2 cut(s)	230, 488
AccB7I	CCANNNNNTGG	2 cut(s)	114, 746
AciI	CCGC	2 cut(s)	138, 704
AcsI	RAATTY	2 cut(s)	716, 769
AcyI	GRCGYC	3 cut(s)	168, 231, 348
AfaI	GTAC	4 cut(s)	46, 305, 453, 808
AfiI	CCNNNNNNNGG	4 cut(s)	114, 430, 640, 746
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	6 cut(s)	128, 292, 344, 569, 761, 842
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	5 cut(s)	6, 9, 324, 362, 731
ApoI	RAATTY	2 cut(s)	716, 769
AspA2I	CCTAGG	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	72
AvrII	CCTAGG	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	2 cut(s)	230, 488
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	311, 349, 743
BccI	CCATC	3 cut(s)	56, 221, 380
BceAI	ACGGC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	3 cut(s)	35, 98, 425
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	5 cut(s)	7, 10, 325, 363, 732
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	5 cut(s)	8, 11, 326, 364, 733
BmiI	GGNNCC	3 cut(s)	232, 422, 490
BmsI	GCATC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	639
BsaHI	GRCGYC	3 cut(s)	168, 231, 348
BsaJI	CCNNGG	5 cut(s)	97, 171, 234, 429, 544
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 430, 640, 746
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	5 cut(s)	97, 171, 234, 429, 544
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	114, 430, 640, 746
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	311, 349, 743
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	2 cut(s)	230, 488
BsiHKAI	GWGCWC	1 cut(s)	206
BslI	CCNNNNNNNGG	4 cut(s)	114, 430, 640, 746
BsmAI	GTCTC	1 cut(s)	517
BsmBI	CGTCTC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	206, 491
Bsp1407I	TGTACA	1 cut(s)	806
BspACI	CCGC	2 cut(s)	138, 704
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	232, 422, 490
BspT107I	GGYRCC	2 cut(s)	230, 488
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	806
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	5 cut(s)	97, 171, 234, 429, 544
BssNI	GRCGYC	3 cut(s)	168, 231, 348
BssT1I	CCWWGG	4 cut(s)	97, 171, 429, 544
Bst4CI	ACNGT	2 cut(s)	466, 838
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	3 cut(s)	168, 231, 348
BstAUI	TGTACA	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	193, 367
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 188, 201, 381
BstNSI	RCATGY	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	311, 349, 743
BstXI	CCANNNNNNTGG	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	751, 834
Cac8I	GCNNGC	2 cut(s)	193, 367
CfoI	GCGC	1 cut(s)	233
CseI	GACGC	2 cut(s)	176, 337
Csp6I	GTAC	4 cut(s)	45, 304, 452, 807
CviAII	CATG	3 cut(s)	301, 395, 741
CviQI	GTAC	4 cut(s)	45, 304, 452, 807
DdeI	CTNAG	1 cut(s)	639
DinI	GGCGCC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	4 cut(s)	97, 171, 429, 544
Eco91I	GGTNACC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	142
EcoT14I	CCWWGG	4 cut(s)	97, 171, 429, 544
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	4 cut(s)	97, 171, 429, 544
Esp3I	CGTCTC	1 cut(s)	517
FaeI	CATG	3 cut(s)	304, 398, 744
FaiI	YATR	5 cut(s)	302, 317, 396, 742, 859
FatI	CATG	3 cut(s)	300, 394, 740
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	7, 10, 325, 363, 732
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	7, 10, 325, 363, 732
FspBI	CTAG	3 cut(s)	35, 98, 425
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	5 cut(s)	7, 10, 325, 363, 732
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	2 cut(s)	176, 337
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	3 cut(s)	168, 231, 348
Hin1II	CATG	3 cut(s)	304, 398, 744
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	6 cut(s)	27, 93, 132, 270, 784, 797
HphI	GGTGA	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	783, 821
Hpy188III	TCNNGA	3 cut(s)	224, 406, 560
HpyAV	CCTTC	2 cut(s)	122, 440
HpyCH4III	ACNGT	2 cut(s)	466, 838
HpyCH4IV	ACGT	4 cut(s)	333, 526, 564, 765
HpyCH4V	TGCA	6 cut(s)	182, 195, 710, 731, 744, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 188, 201, 381
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	4 cut(s)	333, 526, 564, 765
Hsp92I	GRCGYC	3 cut(s)	168, 231, 348
Hsp92II	CATG	3 cut(s)	304, 398, 744
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	3 cut(s)	311, 349, 743
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	35, 98, 425
MaeII	ACGT	4 cut(s)	333, 526, 564, 765
MaeIII	GTNAC	2 cut(s)	142, 460
MboII	GAAGA	1 cut(s)	452
MfeI	CAATTG	2 cut(s)	112, 217
MhlI	GDGCHC	2 cut(s)	206, 491
MluCI	AATT	9 cut(s)	112, 197, 217, 554, 597, 607, 657, 716, 769
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	102, 141, 279
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	7 cut(s)	29, 149, 223, 268, 436, 498, 680
MseI	TTAA	2 cut(s)	483, 627
MspA1I	CMGCKG	2 cut(s)	138, 704
MunI	CAATTG	2 cut(s)	112, 217
MwoI	GCNNNNNNNGC	4 cut(s)	15, 188, 201, 381
NarI	GGCGCC	1 cut(s)	231
NlaIII	CATG	3 cut(s)	304, 398, 744
NlaIV	GGNNCC	3 cut(s)	232, 422, 490
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	27, 784, 797
PflMI	CCANNNNNTGG	2 cut(s)	114, 746
PkrI	GCNGC	5 cut(s)	8, 11, 326, 364, 733
PleI	GAGTC	3 cut(s)	101, 140, 278
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	3 cut(s)	101, 140, 278
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	859
PspEI	GGTNACC	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	232, 422, 490
RsaI	GTAC	4 cut(s)	46, 305, 453, 808
RsaNI	GTAC	4 cut(s)	45, 304, 452, 807
SaqAI	TTAA	2 cut(s)	483, 627
SatI	GCNGC	5 cut(s)	7, 10, 325, 363, 732
SchI	GAGTC	3 cut(s)	102, 141, 279
SduI	GDGCHC	2 cut(s)	206, 491
SfaNI	GCATC	1 cut(s)	399
SfoI	GGCGCC	1 cut(s)	232
Sse9I	AATT	9 cut(s)	112, 197, 217, 554, 597, 607, 657, 716, 769
SsiI	CCGC	2 cut(s)	138, 704
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	35, 98, 425
StyI	CCWWGG	4 cut(s)	97, 171, 429, 544
TaaI	ACNGT	2 cut(s)	466, 838
TaiI	ACGT	4 cut(s)	336, 529, 567, 768
TaqI	TCGA	3 cut(s)	273, 407, 685
TasI	AATT	9 cut(s)	112, 197, 217, 554, 597, 607, 657, 716, 769
TatI	WGTACW	1 cut(s)	806
TfiI	GAWTC	3 cut(s)	27, 784, 797
Tru1I	TTAA	2 cut(s)	483, 627
Tru9I	TTAA	2 cut(s)	483, 627
TscAI	CASTG	2 cut(s)	751, 841
TseI	GCWGC	5 cut(s)	6, 9, 324, 362, 731
TspDTI	ATGAA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	751, 841
Van91I	CCANNNNNTGG	2 cut(s)	114, 746
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	716, 769
XceI	RCATGY	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	35, 98, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.