Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

30067989 .. 30069032

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCATTGAACAGCCAAATGTTTCACATTGTGATAAACGGCTGCCAGGATGTACTCATTCAAGGCGTCAAAATTATCGCTGCTGGCAATAGCCCTAACACCGACGGCATTCATGTCCAATTTTCCAAAAATGTTGCAATCTTCGACACCTCCATCAAAACTGGGGACGACTGTGTCTCTATTGGCCCTGCGACCAAGGACTTGTGGATGGAACGCATAACATGCGGACCTGGCCCCGGCATTAGCATAGGGAGCCTGGCCAAAGACTTGGAAGAGGAAGGAGTACAAAACGTAACAGTTAAAAATGCAATTTTTAAGGGTACCACAAATGGGCTCATGAGGATCAAATCTTGGGCAAGACCTAGCACCGGGTTTGTCCAAGGTGTTCGATTCCTTGATGTCGTAACGCTTAATGTCCAAAATCCCATCGTAATTGACCAGAATTACTGCCCACACAACCTCAACTGTCCTGGTCAGGTATCTGGTGTCAAAGTTAGCGATGTACTGTACCAGAACATTCGAGGCACATCGACAACTGCAGTTGCAGTAAAATTTGATTGCAGTGCAACAAATCCATGCAGTGGGATAAGACTCGAAAATGTGAATTTGACTTGCCGGAAGCAAGTAGTTCAATCATACTGTACGAATGTACATGGAAAGAGTGTTGAGCAGTTGTTTGTAATATTCAAAAACAAGTCAGGCATGTACATAGCTGTGCACATGAATACTGTAACGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

246

Amino Acids

26.61

Weight (kDa)

8.36

Isoelectric Point (pI)

19.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	2 - 219	7.6e-64	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	551, 604
AcyI	GRCGYC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	8 cut(s)	54, 285, 322, 504, 509, 643, 651, 707
AfiI	CCNNNNNNNGG	4 cut(s)	236, 330, 368, 581
AgsI	TTSAA	4 cut(s)	10, 62, 632, 688
AjnI	CCWGG	4 cut(s)	45, 229, 255, 469
AluBI	AGCT	1 cut(s)	713
AluI	AGCT	1 cut(s)	713
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	1 cut(s)	181
Alw44I	GTGCAC	1 cut(s)	716
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	3 cut(s)	184, 232, 258
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	42, 80
ApoI	RAATTY	2 cut(s)	551, 604
Asp718I	GGTACC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	185, 227, 233
AsuC2I	CCSGG	2 cut(s)	237, 370
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	2 cut(s)	29, 67
BccI	CCATC	3 cut(s)	161, 202, 434
BceAI	ACGGC	2 cut(s)	55, 121
BciT130I	CCWGG	4 cut(s)	47, 231, 257, 471
BcnI	CCSGG	2 cut(s)	237, 370
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	43, 81
BlsI	GCNGC	2 cut(s)	44, 82
Bme1390I	CCNGG	6 cut(s)	47, 231, 237, 257, 370, 471
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	185, 227, 233
BmiI	GGNNCC	3 cut(s)	235, 254, 322
BmrFI	CCNGG	6 cut(s)	47, 231, 237, 257, 370, 471
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	237, 370
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	195, 235, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 330, 368, 581
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	4 cut(s)	47, 231, 257, 471
BseDI	CCNNGG	3 cut(s)	195, 235, 379
BseGI	GGATG	2 cut(s)	55, 213
BseLI	CCNNNNNNNGG	4 cut(s)	236, 330, 368, 581
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	29, 67
BshFI	GGCC	3 cut(s)	186, 234, 260
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	3 cut(s)	237, 369, 616
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	4 cut(s)	236, 330, 368, 581
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	186, 234, 260
Bsp1286I	GDGCHC	2 cut(s)	336, 720
Bsp1407I	TGTACA	2 cut(s)	649, 705
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	186, 234, 260
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	235, 254, 322
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	320
BsrGI	TGTACA	2 cut(s)	649, 705
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	195, 235, 379
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	195, 379
Bst2UI	CCWGG	4 cut(s)	47, 231, 257, 471
Bst4CI	ACNGT	6 cut(s)	173, 298, 467, 507, 641, 730
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstAUI	TGTACA	2 cut(s)	649, 705
BstC8I	GCNNGC	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	55, 213
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 231, 252
BstNI	CCWGG	4 cut(s)	47, 231, 257, 471
BstNSI	RCATGY	2 cut(s)	225, 706
BstSCI	CCNGG	6 cut(s)	45, 229, 235, 255, 368, 469
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	29, 67
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	186, 234, 260
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	55, 213
BtsI	GCAGTG	2 cut(s)	568, 586
BtsIMutI	CAGTG	2 cut(s)	568, 586
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	185, 227, 233
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	8 cut(s)	53, 284, 321, 503, 508, 642, 650, 706
CviAII	CATG	7 cut(s)	113, 222, 337, 576, 653, 703, 721
CviJI	RGCY	9 cut(s)	15, 42, 93, 186, 234, 255, 260, 334, 713
CviKI_1	RGCY	9 cut(s)	15, 42, 93, 186, 234, 255, 260, 334, 713
CviQI	GTAC	8 cut(s)	53, 284, 321, 503, 508, 642, 650, 706
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DraIII	CACNNNGTG	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	195, 379
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	4 cut(s)	45, 229, 255, 469
EcoT14I	CCWWGG	2 cut(s)	195, 379
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	195, 379
FaeI	CATG	7 cut(s)	116, 225, 340, 579, 656, 706, 724
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	7 cut(s)	112, 221, 336, 575, 652, 702, 720
Fnu4HI	GCNGC	2 cut(s)	43, 81
FokI	GGATG	2 cut(s)	62, 220
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	43, 81
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	2 cut(s)	43, 81
HaeIII	GGCC	3 cut(s)	186, 234, 260
HapII	CCGG	3 cut(s)	237, 369, 616
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	7 cut(s)	116, 225, 340, 579, 656, 706, 724
HinfI	GANTC	2 cut(s)	390, 591
HpaII	CCGG	3 cut(s)	237, 369, 616
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	6 cut(s)	173, 298, 467, 507, 641, 730
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	8 cut(s)	137, 308, 539, 545, 561, 566, 579, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 231, 252
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	116, 225, 340, 579, 656, 706, 724
KpnI	GGTACC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	2 cut(s)	29, 67
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	292, 403, 730
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	133, 284
MhlI	GDGCHC	2 cut(s)	336, 720
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	7 cut(s)	72, 119, 309, 432, 442, 551, 604
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	585
MnlI	CCTC	5 cut(s)	160, 268, 333, 470, 515
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	300, 315, 411
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	3 cut(s)	237, 369, 616
MspR9I	CCNGG	6 cut(s)	47, 231, 237, 257, 370, 471
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	4 cut(s)	47, 231, 257, 471
MwoI	GCNNNNNNNGC	3 cut(s)	222, 231, 252
NciI	CCSGG	2 cut(s)	237, 370
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	7 cut(s)	116, 225, 340, 579, 656, 706, 724
NlaIV	GGNNCC	3 cut(s)	235, 254, 322
NspI	RCATGY	2 cut(s)	225, 706
PagI	TCATGA	1 cut(s)	336
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	44, 82
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
Psp6I	CCWGG	4 cut(s)	45, 229, 255, 469
PspGI	CCWGG	4 cut(s)	45, 229, 255, 469
PspN4I	GGNNCC	3 cut(s)	235, 254, 322
PspPI	GGNCC	3 cut(s)	185, 227, 233
PstI	CTGCAG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	8 cut(s)	54, 285, 322, 504, 509, 643, 651, 707
RsaNI	GTAC	8 cut(s)	53, 284, 321, 503, 508, 642, 650, 706
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	3 cut(s)	300, 315, 411
SatI	GCNGC	2 cut(s)	43, 81
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	3 cut(s)	185, 227, 233
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	6 cut(s)	47, 231, 237, 257, 370, 471
SduI	GDGCHC	2 cut(s)	336, 720
SetI	ASST	8 cut(s)	152, 232, 294, 364, 385, 462, 480, 715
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	7 cut(s)	72, 119, 309, 432, 442, 551, 604
SsiI	CCGC	1 cut(s)	225
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	6 cut(s)	45, 229, 235, 255, 368, 469
StyI	CCWWGG	2 cut(s)	195, 379
TaaI	ACNGT	6 cut(s)	173, 298, 467, 507, 641, 730
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	5 cut(s)	144, 388, 520, 530, 594
TasI	AATT	7 cut(s)	72, 119, 309, 432, 442, 551, 604
TatI	WGTACW	5 cut(s)	52, 283, 502, 649, 705
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	300, 315, 411
Tru9I	TTAA	3 cut(s)	300, 315, 411
TscAI	CASTG	2 cut(s)	568, 586
TseI	GCWGC	2 cut(s)	42, 80
TspDTI	ATGAA	2 cut(s)	101, 737
TspRI	CASTG	2 cut(s)	568, 586
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	581
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	551, 604
XceI	RCATGY	2 cut(s)	225, 706
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.