Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325457.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

3 .. 686

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325457.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgtactcattcaaagcgtcaaagtcattgccgctggaaatagcccaaacactgatggcatccatgtccagttttccagaaatgttgcaatcttcgacacctccatcaaaactggggacgattgtgtctctattggccccggcaccaaggaattgtggatggaacgcatatcatgcggacctggccatggcattagataagttaaagtccgcactccgcatgcgtatacatgtaaacattatgttcatattcattgaagttatttttcttaaagcagtcatagggagtttggccaaagacttggaagaggaaggaatccaaaatgtaacactgaaaaatgcgattttcaagggaactacaaatggtctcaggataaagtcctgggcaagacccagcaccgggtttgtgcaaggtgtccgatcccttgatgttgaaatgattaatgtccaaaaccccattgtaattgaccagaattactgcccacacaacctcaactgtcctggtcaggtaaaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

172

Amino Acids

18.95

Weight (kDa)

9.24

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	4 cut(s)	32, 176, 210, 217
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	183, 291
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	187, 398, 399
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	13, 257, 349, 434
AjnI	CCWGG	3 cut(s)	180, 380, 499
Alw26I	GTCTC	2 cut(s)	132, 371
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	135, 183, 291
AseI	ATTAAT	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	136, 178
AsuC2I	CCSGG	2 cut(s)	140, 400
AvaII	GGWCC	1 cut(s)	178
BalI	TGGCCA	2 cut(s)	185, 293
BanI	GGYRCC	1 cut(s)	142
BccI	CCATC	3 cut(s)	49, 112, 153
BciT130I	CCWGG	3 cut(s)	182, 382, 501
BcnI	CCSGG	2 cut(s)	140, 400
BcoDI	GTCTC	2 cut(s)	132, 371
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	5 cut(s)	140, 182, 382, 400, 501
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	136, 178
BmiI	GGNNCC	2 cut(s)	138, 144
BmrFI	CCNGG	5 cut(s)	140, 182, 382, 400, 501
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	140, 400
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	138, 146, 186, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 398, 399
Bse1I	ACTGG	2 cut(s)	69, 117
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	3 cut(s)	182, 382, 501
BseDI	CCNNGG	4 cut(s)	138, 146, 186, 381
BseGI	GGATG	2 cut(s)	59, 164
BseLI	CCNNNNNNNGG	3 cut(s)	187, 398, 399
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	69, 117
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	3 cut(s)	137, 185, 293
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	140, 399
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	187, 398, 399
BsmAI	GTCTC	2 cut(s)	132, 371
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	3 cut(s)	137, 185, 293
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	419
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	4 cut(s)	32, 176, 210, 217
BspANI	GGCC	3 cut(s)	137, 185, 293
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	138, 144
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	69, 117
BssECI	CCNNGG	4 cut(s)	138, 146, 186, 381
BssMI	GATC	1 cut(s)	419
BssNAI	GTATAC	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	146, 186
Bst1107I	GTATAC	1 cut(s)	227
Bst2UI	CCWGG	3 cut(s)	182, 382, 501
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	368
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	59, 164
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	2 cut(s)	132, 371
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 182
BstNI	CCWGG	3 cut(s)	182, 382, 501
BstNSI	RCATGY	2 cut(s)	223, 233
BstSCI	CCNGG	5 cut(s)	138, 180, 380, 398, 499
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	137, 185, 293
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	59, 164
BtsIMutI	CAGTG	2 cut(s)	50, 329
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	136, 178
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	64, 173, 187, 220, 230
CviJI	RGCY	4 cut(s)	44, 137, 185, 293
CviKI_1	RGCY	4 cut(s)	44, 137, 185, 293
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	183, 291
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	146, 186
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	180, 380, 499
EcoT14I	CCWWGG	2 cut(s)	146, 186
ErhI	CCWWGG	2 cut(s)	146, 186
FaeI	CATG	5 cut(s)	67, 176, 190, 223, 233
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	5 cut(s)	63, 172, 186, 219, 229
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	46, 171
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	137, 185, 293
HapII	CCGG	2 cut(s)	140, 399
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	67, 176, 190, 223, 233
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	140, 399
Hpy166II	GTNNAC	2 cut(s)	227, 235
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	2 cut(s)	77, 370
Hpy8I	GTNNAC	2 cut(s)	227, 235
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	2 cut(s)	88, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 182
HpyF3I	CTNAG	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	67, 176, 190, 223, 233
Kzo9I	GATC	1 cut(s)	419
LweI	GCATC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	2 cut(s)	84, 317
MlsI	TGGCCA	2 cut(s)	185, 293
MluCI	AATT	3 cut(s)	151, 462, 472
MluNI	TGGCCA	2 cut(s)	185, 293
MnlI	CCTC	3 cut(s)	111, 301, 500
Mox20I	TGGCCA	2 cut(s)	185, 293
MscI	TGGCCA	2 cut(s)	185, 293
MseI	TTAA	4 cut(s)	203, 270, 441, 517
Msp20I	TGGCCA	2 cut(s)	185, 293
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	140, 399
MspR9I	CCNGG	5 cut(s)	140, 182, 382, 400, 501
MvaI	CCWGG	3 cut(s)	182, 382, 501
MwoI	GCNNNNNNNGC	2 cut(s)	173, 182
NciI	CCSGG	2 cut(s)	140, 400
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	5 cut(s)	67, 176, 190, 223, 233
NlaIV	GGNNCC	2 cut(s)	138, 144
NspI	RCATGY	2 cut(s)	223, 233
PaeI	GCATGC	1 cut(s)	223
PciI	ACATGT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	33
PscI	ACATGT	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	3 cut(s)	180, 380, 499
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	180, 380, 499
PspN4I	GGNNCC	2 cut(s)	138, 144
PspPI	GGNCC	2 cut(s)	136, 178
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	203, 270, 441, 517
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	2 cut(s)	136, 178
ScrFI	CCNGG	5 cut(s)	140, 182, 382, 400, 501
SetI	ASST	5 cut(s)	103, 183, 415, 492, 510
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	178
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	3 cut(s)	151, 462, 472
SsiI	CCGC	4 cut(s)	32, 176, 210, 217
StyD4I	CCNGG	5 cut(s)	138, 180, 380, 398, 499
StyI	CCWWGG	2 cut(s)	146, 186
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	151, 462, 472
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	4 cut(s)	203, 270, 441, 517
Tru9I	TTAA	4 cut(s)	203, 270, 441, 517
TscAI	CASTG	2 cut(s)	57, 336
TspDTI	ATGAA	2 cut(s)	235, 241
TspRI	CASTG	2 cut(s)	57, 336
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	441
XceI	RCATGY	2 cut(s)	223, 233
XmiI	GTMKAC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.