Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013102.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

34758 .. 35516

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013102.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgactaagcttacaagttgttctgccacgattgtattaatttttctacacattctatgccaatcatctgcttctggtgatgagacgactaatggtacttataatgttctggagtttggagctaagcgcaattgtgtaactgattcaacccaagcttttctcaatgcttggttagtagcctgtggttcctccgcaaattccactgagatatatgtaccaaaggggaggtatttgctcagcactatggcctttaaaggcgactgcaaaagctcacacatcacttttcgggttgatggaacactcgtggcttcacctgattaccgagtactaggccaagctaacaactggttgagctttgaaggagttagcggggtaaagattgtcggaggagcacttgatgccaaaggttcggccttatgggcttgcaaattaagtaccaaaaccgccagttgtcctgagggagccacgactttgagttttacaaactccaaagacattagagttgaaggactaatgtcactgaacagccaaatgtttcacattgtgataaacggttgccaagatgtactgattcaaggcgtcaaagtcattgacgctggaaatagcccaaacactgatggtatccatgtccagttttccagaaatgtttgcaatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

219

Amino Acids

23.32

Weight (kDa)

7.53

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AciI	CCGC	3 cut(s)	192, 369, 444
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	5 cut(s)	97, 216, 327, 436, 567
AgsI	TTSAA	4 cut(s)	147, 359, 506, 575
AluBI	AGCT	6 cut(s)	10, 122, 155, 270, 338, 354
AluI	AGCT	6 cut(s)	10, 122, 155, 270, 338, 354
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	246, 331, 411
ApoI	RAATTY	1 cut(s)	196
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	89, 303
AxyI	CCTNAGG	1 cut(s)	456
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	2 cut(s)	287, 611
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	419
BlpI	GCTNAGC	2 cut(s)	123, 236
BmcAI	AGTACT	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	187, 463
BmsI	GCATC	1 cut(s)	388
BoxI	GACNNNNGTC	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	2 cut(s)	123, 236
BsaHI	GRCGYC	1 cut(s)	579
Bse1I	ACTGG	3 cut(s)	350, 447, 631
Bse21I	CCTNAGG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	195, 250, 447
BseNI	ACTGG	3 cut(s)	350, 447, 631
BseRI	GAGGAG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	248, 333, 413
BsiHKAI	GWGCWC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	248, 333, 413
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1720I	GCTNAGC	2 cut(s)	123, 236
BspACI	CCGC	3 cut(s)	192, 369, 444
BspANI	GGCC	3 cut(s)	248, 333, 413
BspCNI	CTCAG	3 cut(s)	196, 249, 448
BspLI	GGNNCC	2 cut(s)	187, 463
BsrI	ACTGG	3 cut(s)	350, 447, 631
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	5 cut(s)	6, 123, 204, 236, 456
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 419
BstPAI	GACNNNNGTC	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	248, 333, 413
BtsIMutI	CAGTG	3 cut(s)	201, 518, 612
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	2 cut(s)	568, 602
Csp6I	GTAC	5 cut(s)	96, 215, 326, 435, 566
CviAII	CATG	1 cut(s)	626
CviQI	GTAC	5 cut(s)	96, 215, 326, 435, 566
DdeI	CTNAG	5 cut(s)	6, 123, 204, 236, 456
DraI	TTTAAA	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	544
Eco81I	CCTNAGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	629
FaiI	YATR	7 cut(s)	58, 102, 211, 213, 245, 418, 627
FatI	CATG	1 cut(s)	625
FauI	CCCGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	248, 333, 413
HgaI	GACGC	2 cut(s)	568, 602
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	2 cut(s)	8, 153
HinfI	GANTC	2 cut(s)	143, 571
HphI	GGTGA	2 cut(s)	89, 303
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	3 cut(s)	110, 455, 639
HpyAV	CCTTC	2 cut(s)	353, 500
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4V	TGCA	3 cut(s)	264, 426, 651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 419
HpyF3I	CTNAG	5 cut(s)	6, 123, 204, 236, 456
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	119, 389, 461
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	136, 516
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	39, 130, 196, 428
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	199, 219, 380, 451
MseI	TTAA	3 cut(s)	38, 252, 431
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	398, 419
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	2 cut(s)	187, 463
NmuCI	GTSAC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	143, 571
PshAI	GACNNNNGTC	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	187, 463
RsaI	GTAC	5 cut(s)	97, 216, 327, 436, 567
RsaNI	GTAC	5 cut(s)	96, 215, 326, 435, 566
SaqAI	TTAA	3 cut(s)	38, 252, 431
ScaI	AGTACT	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	9 cut(s)	12, 124, 157, 230, 272, 316, 340, 356, 409
SfaNI	GCATC	1 cut(s)	388
Sse9I	AATT	4 cut(s)	39, 130, 196, 428
SsiI	CCGC	3 cut(s)	192, 369, 444
SspMI	CTAG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	554
TasI	AATT	4 cut(s)	39, 130, 196, 428
TatI	WGTACW	2 cut(s)	325, 565
TfiI	GAWTC	2 cut(s)	143, 571
Tru1I	TTAA	3 cut(s)	38, 252, 431
Tru9I	TTAA	3 cut(s)	38, 252, 431
TscAI	CASTG	3 cut(s)	208, 525, 619
TseFI	GTSAC	1 cut(s)	516
Tsp45I	GTSAC	1 cut(s)	516
TspRI	CASTG	3 cut(s)	208, 525, 619
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	196
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.