Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

9799647 .. 9800227

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTTACGAGGGAAGGAGTTCAAAATGTGACGGTGAAGGATGCAATTTTCAAGGGTGGCCAAAATGGTTTGAGGATCAAGTCTTGGGCGAGGCCGAGCCACGGGTTTGTTCAAGGTGTCCAATTCCTTGACGTCGTCATGCTCAATGTCCAAAATCCCATTGTCATAGACCAAAATTACTGCCCACACAAGCTCAACTGCCCTGGTCAGGTGTCGGGTGTGAAAGTCAGTGATGTATTGTTCCGAAGCATTCAAGGAACATCGGGAACAAAAATTGCGATAAACCTTGATTGCAGTGCAGCAAATCCTTGCAGCGGGATAACGCTCGAAAACGTGAGCATGATTTGCAAGAAGCAAGTGGCTCGGTCATATTGTAGTAATGCAATTGGAAAGACTTCTGGCCTTGTACACCCAACTAGTTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

143

Amino Acids

15.22

Weight (kDa)

9.23

Isoelectric Point (pI)

16.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	3 cut(s)	101, 208, 314
AgsI	TTSAA	4 cut(s)	23, 52, 113, 254
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	3 cut(s)	58, 92, 400
ApeKI	GCWGC	2 cut(s)	299, 312
Asp700I	GAANNNNTTC	2 cut(s)	18, 394
AsuHPI	GGTGA	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	311, 324
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	2 cut(s)	300, 313
BlsI	GCNGC	2 cut(s)	301, 314
Bme1390I	CCNGG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	100, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 208, 314
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	100, 202
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	101, 208, 314
BseXI	GCAGC	2 cut(s)	311, 324
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	60, 94, 402
BslI	CCNNNNNNNGG	3 cut(s)	101, 208, 314
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	3 cut(s)	60, 94, 402
Bsp1407I	TGTACA	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	3 cut(s)	60, 94, 402
BspPI	GGATC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	100, 202
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	311, 324
BsuRI	GGCC	3 cut(s)	60, 94, 402
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	235, 301
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	2 cut(s)	139, 340
CviJI	RGCY	6 cut(s)	60, 94, 99, 193, 362, 402
CviKI_1	RGCY	6 cut(s)	60, 94, 99, 193, 362, 402
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	142, 343
FaiI	YATR	5 cut(s)	140, 167, 341, 370, 427
FatI	CATG	2 cut(s)	138, 339
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	300, 313
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	300, 313
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	2 cut(s)	300, 313
HaeIII	GGCC	3 cut(s)	60, 94, 402
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	142, 343
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	8, 31
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	132, 333
HpyCH4V	TGCA	6 cut(s)	44, 294, 299, 312, 348, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	132, 333
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	142, 343
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	4 cut(s)	189, 194, 216, 384
Lsp1109I	GCAGC	2 cut(s)	311, 324
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	2 cut(s)	132, 333
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MfeI	CAATTG	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	5 cut(s)	45, 122, 175, 273, 384
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	3 cut(s)	3, 66, 84
Mox20I	TGGCCA	1 cut(s)	60
MroXI	GAANNNNTTC	2 cut(s)	18, 394
MscI	TGGCCA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	142, 343
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	28
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	18, 394
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	301, 314
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SatI	GCNGC	2 cut(s)	300, 313
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	6 cut(s)	118, 135, 195, 213, 288, 336
SfaNI	GCATC	1 cut(s)	31
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	5 cut(s)	45, 122, 175, 273, 384
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	135, 336
TaqI	TCGA	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	45, 122, 175, 273, 384
TatI	WGTACW	1 cut(s)	406
TscAI	CASTG	2 cut(s)	235, 301
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	299, 312
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	2 cut(s)	235, 301
Tth111I	GACNNNGTC	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	18, 394
XspI	CTAG	1 cut(s)	417
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.