Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

9780305 .. 9780809

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATGAAGGATGCAATTTTCAAGGGTGGCCAAAACGGTTTGAGGATCGAGTCTTGGGTGAGGCCGAGCCACAGGTTTGTTCAAGGTGTCCAATTCCTTGACGTCGTCATGCTCAATGTCCAAAATCCCATTGTCATAGACCAAAATTACTGCCCACACAACCTCAACTGCCCTGGCCAGGCATCGGGTGTGAAAGTCAGTGATGTATTGTTCCAAAACATTCAAGGAACATCGGCAACAGCAATTGCGATAAACCTTGATTGCCGTGCAGCAAATCCTTGCAGCAGGATAACACTCAAAAATGTGAGCTTGACCTGCAAAAAGCAAGTGGCTCAGTCATGTTGTAACAATGCAATTGGAAAGACTTCTGGCCTTGTACACCCAACTAGTTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

133

Amino Acids

14.27

Weight (kDa)

9.05

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	3 - 117	4.8e-27	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	2 cut(s)	28, 175
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	178, 184
AgsI	TTSAA	3 cut(s)	22, 83, 224
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	2 cut(s)	172, 177
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	4 cut(s)	28, 62, 175, 370
ApeKI	GCWGC	2 cut(s)	269, 282
Asp700I	GAANNNNTTC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	70
BalI	TGGCCA	2 cut(s)	30, 177
BbvI	GCAGC	2 cut(s)	281, 294
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	174, 179
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	270, 283
BlsI	GCNGC	2 cut(s)	271, 284
Bme1390I	CCNGG	2 cut(s)	174, 179
BmrFI	CCNGG	2 cut(s)	174, 179
BmsI	GCATC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 184
BseBI	CCWGG	2 cut(s)	174, 179
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	178, 184
BseMII	CTCAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	281, 294
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	30, 64, 177, 372
BslI	CCNNNNNNNGG	2 cut(s)	178, 184
BsnI	GGCC	4 cut(s)	30, 64, 177, 372
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	4 cut(s)	30, 64, 177, 372
BspCNI	CTCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	174, 179
Bst4CI	ACNGT	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	2 cut(s)	174, 179
BstSCI	CCNGG	2 cut(s)	172, 177
BstV1I	GCAGC	2 cut(s)	281, 294
BsuRI	GGCC	4 cut(s)	30, 64, 177, 372
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	2 cut(s)	109, 339
CviJI	RGCY	7 cut(s)	30, 64, 69, 177, 309, 332, 372
CviKI_1	RGCY	7 cut(s)	30, 64, 69, 177, 309, 332, 372
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	28, 175
EcoRII	CCWGG	2 cut(s)	172, 177
FaeI	CATG	2 cut(s)	112, 342
FaiI	YATR	3 cut(s)	110, 137, 340
FatI	CATG	2 cut(s)	108, 338
Fnu4HI	GCNGC	2 cut(s)	270, 283
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	270, 283
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	270, 283
HaeIII	GGCC	4 cut(s)	30, 64, 177, 372
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	112, 342
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	14, 269, 282, 318, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	112, 342
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	8 cut(s)	58, 159, 164, 186, 191, 271, 328, 354
Lsp1109I	GCAGC	2 cut(s)	281, 294
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MfeI	CAATTG	2 cut(s)	243, 354
MlsI	TGGCCA	2 cut(s)	30, 177
MluCI	AATT	5 cut(s)	15, 92, 145, 243, 354
MluNI	TGGCCA	2 cut(s)	30, 177
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	36, 54, 173
Mox20I	TGGCCA	2 cut(s)	30, 177
MroXI	GAANNNNTTC	1 cut(s)	364
MscI	TGGCCA	2 cut(s)	30, 177
Msp20I	TGGCCA	2 cut(s)	30, 177
MspR9I	CCNGG	2 cut(s)	174, 179
MunI	CAATTG	2 cut(s)	243, 354
MvaI	CCWGG	2 cut(s)	174, 179
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	112, 342
NmeAIII	GCCGAG	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	271, 284
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	172, 177
PspGI	CCWGG	2 cut(s)	172, 177
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SatI	GCNGC	2 cut(s)	270, 283
Sau3AI	GATC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	174, 179
SetI	ASST	7 cut(s)	77, 88, 105, 165, 258, 311, 317
SfaNI	GCATC	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	5 cut(s)	15, 92, 145, 243, 354
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	172, 177
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	15, 92, 145, 243, 354
TatI	WGTACW	1 cut(s)	376
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	269, 282
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	1 cut(s)	387
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.