Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

28128789 .. 28130338

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAAGAAGATCTGCACCAACCGGAAATGAAGCAGTTTTGTCCGTCCTGCACAGTCTCTCTCTCTCTCTCTGTTGTCGCCGTACATCTTGTGCTGCCTCAGCTCCGTCGAGAACGTCGGCGAGTTTGTCAGGGACATCCTGCTCGTGTCCCCAAGCATGGTGGTGTCCGGAGCTTGAGCGATGTCATTCAGGAGGAAATTCATGTCCGGGCTCGAGTTCGTCGACAGCGATGGGCTGGACGAGGCGGTGCTGGGCTCAGGGATGACTCAGATTTCTCAGCTGTGGTTGAGGGAGCGTTGAAAGTCAATGCTTCTGGTAAAATTGAATATTACTCTTCGTCAAGCTTATTAAGCATAGATGGCCACGTGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

9.3

Isoelectric Point (pI)

75.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	301, 326
AluBI	AGCT	4 cut(s)	103, 174, 281, 345
AluI	AGCT	4 cut(s)	103, 174, 281, 345
Alw26I	GTCTC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	214, 258
BauI	CACGAG	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	2 cut(s)	225, 353
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	99, 257
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	367
BsaWI	WCCGGW	2 cut(s)	22, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	168
BseGI	GGATG	2 cut(s)	136, 268
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	4 cut(s)	113, 271, 282, 291
BseXI	GCAGC	1 cut(s)	81
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	23, 169, 208
BslFI	GGGAC	2 cut(s)	134, 147
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	134, 147
BsnI	GGCC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	214, 258
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	4 cut(s)	112, 270, 281, 290
BspEI	TCCGGA	1 cut(s)	168
BssMI	GATC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	367
BstDEI	CTNAG	4 cut(s)	99, 257, 268, 277
BstF5I	GGATG	2 cut(s)	136, 268
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 351, 360
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	363
BtgZI	GCGATG	2 cut(s)	195, 244
BtsCI	GGATG	2 cut(s)	136, 268
Csp6I	GTAC	1 cut(s)	83
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	2 cut(s)	158, 203
CviJI	RGCY	8 cut(s)	103, 174, 212, 236, 256, 281, 345, 363
CviKI_1	RGCY	8 cut(s)	103, 174, 212, 236, 256, 281, 345, 363
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	4 cut(s)	99, 257, 268, 277
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	214, 258
Eco72I	CACGTG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	214, 258
FaeI	CATG	2 cut(s)	161, 206
FaiI	YATR	3 cut(s)	159, 204, 356
FaqI	GGGAC	2 cut(s)	134, 147
FatI	CATG	2 cut(s)	157, 202
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	123, 275
FriOI	GRGCYC	2 cut(s)	214, 258
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	3 cut(s)	23, 169, 208
Hin1II	CATG	2 cut(s)	161, 206
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	3 cut(s)	23, 169, 208
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	4 cut(s)	110, 169, 191, 372
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	3 cut(s)	111, 120, 225
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	115, 366
HpyCH4V	TGCA	2 cut(s)	16, 51
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 351, 360
HpyF3I	CTNAG	4 cut(s)	99, 257, 268, 277
HpySE526I	ACGT	2 cut(s)	115, 366
Hsp92II	CATG	2 cut(s)	161, 206
Kpn2I	TCCGGA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	3 cut(s)	108, 171, 293
Lsp1109I	GCAGC	1 cut(s)	81
MaeII	ACGT	2 cut(s)	115, 366
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	17, 20, 327
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	214, 258
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	198, 321
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	108, 187, 236, 283
Mox20I	TGGCCA	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	23, 169, 208
MspR9I	CCNGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	100, 351, 360
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	161, 206
PaeR7I	CTCGAG	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	220, 226
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	251
PspXI	VCTCGAGB	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	214, 258
SetI	ASST	6 cut(s)	105, 118, 176, 283, 347, 369
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	175, 213
SmoI	CTYRAG	2 cut(s)	175, 213
Sse9I	AATT	2 cut(s)	198, 321
SsiI	CCGC	1 cut(s)	246
SspI	AATATT	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	118, 369
TaqI	TCGA	3 cut(s)	109, 214, 223
TasI	AATT	2 cut(s)	198, 321
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	44, 191
TspGWI	ACGGA	2 cut(s)	33, 95
XapI	RAATTY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.