Prupe.7G036000_v2.0.a1

Polygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001539
Physical Location & Seq
Forward (+)
6609958 .. 6610485
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G036000.1

Sequence Viewer

Length: 426 bp
ATGGCTGAGGTTACAAGTTGTTTTAGAAGAGTAGCACTACTCATGATCCTATATATCCTACACAATTCATGTGTTGCTGAGAGTACATTAGTTTTCATTGTCCTAAGCTTCGGAGCCATGCCTAATAGTGTAATAGATTCTACACAAGCTTTTCTGGATCTTCGTCTGATTACCGAATCCTTGGAGGAGGAAGGGGTCCAAAATGTGACAGTTAAAAATGCAATTTTCAAGGGTACTCAAAATGGTTTGAGGATTAAGTCTTGGGCAAGGCCAAGCAACGGATTTGTTCAGGGTGTTCAATTCCTTGATGTCGCAATGTTTAATGTCCAAAATCCTATTGTAATAGACCAAAACTATTGCCCACTTTGGGTCGAGTCCTGTCATTGTGAATCTGTGAAAGCCTCAATCTCTCAACTCTTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

142

Amino Acids

15.76

Weight (kDa)

5.61

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 165
AfaI GTAC 2 cut(s) 85, 235
AfiI CCNNNNNNNGG 2 cut(s) 278, 367
AgsI TTSAA 2 cut(s) 229, 299
AluBI AGCT 2 cut(s) 108, 149
AluI AGCT 2 cut(s) 108, 149
AlwI GGATC 2 cut(s) 40, 165
AoxI GGCC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 115, 197
Bpu10I CCTNAGC 2 cut(s) 6, 104
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 367
Bse3DI GCAATG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 278, 367
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 278, 367
BsnI GGCC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 45, 157
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 115, 197
BspPI GGATC 2 cut(s) 40, 165
BsrDI GCAATG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 45, 157
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 6, 78, 104
BstKTI GATC 2 cut(s) 48, 160
BstMBI GATC 2 cut(s) 45, 157
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 271
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 84, 234
CviAII CATG 3 cut(s) 43, 69, 118
CviJI RGCY 6 cut(s) 5, 108, 116, 149, 271, 401
CviKI_1 RGCY 6 cut(s) 5, 108, 116, 149, 271, 401
CviQI GTAC 2 cut(s) 84, 234
DdeI CTNAG 3 cut(s) 6, 78, 104
DpnI GATC 2 cut(s) 47, 159
DpnII GATC 2 cut(s) 45, 157
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 46, 72, 121
FaiI YATR 5 cut(s) 44, 52, 54, 70, 119
FatI CATG 3 cut(s) 42, 68, 117
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 3 cut(s) 46, 72, 121
HindIII AAGCTT 2 cut(s) 106, 147
HinfI GANTC 4 cut(s) 137, 176, 374, 389
Hpy188I TCNGA 2 cut(s) 113, 168
Hpy188III TCNNGA 2 cut(s) 43, 155
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 6, 78, 104
Hsp92II CATG 3 cut(s) 46, 72, 121
Kzo9I GATC 2 cut(s) 45, 157
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 140, 275, 391
MaeIII GTNAC 2 cut(s) 10, 205
MalI GATC 2 cut(s) 47, 159
MboI GATC 2 cut(s) 45, 157
MboII GAAGA 2 cut(s) 39, 152
MflI RGATCY 1 cut(s) 157
MluCI AATT 3 cut(s) 64, 222, 299
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 178, 181, 243, 412
MseI TTAA 3 cut(s) 213, 255, 321
NdeII GATC 2 cut(s) 45, 157
NlaIII CATG 3 cut(s) 46, 72, 121
NlaIV GGNNCC 2 cut(s) 115, 197
NmuCI GTSAC 1 cut(s) 205
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 3 cut(s) 137, 176, 389
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 115, 197
PspPI GGNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 85, 235
RsaNI GTAC 2 cut(s) 84, 234
SaqAI TTAA 3 cut(s) 213, 255, 321
Sau3AI GATC 2 cut(s) 45, 157
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 383
SetI ASST 3 cut(s) 12, 110, 151
SinI GGWCC 1 cut(s) 196
Sse9I AATT 3 cut(s) 64, 222, 299
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 64, 222, 299
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 3 cut(s) 137, 176, 389
Tru1I TTAA 3 cut(s) 213, 255, 321
Tru9I TTAA 3 cut(s) 213, 255, 321
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 57, 85
TspGWI ACGGA 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.