Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

5485876 .. 5487339

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCATGGAGTGCTGCCTGTACGTGGAGCCTCCACGGATTCCTCTGAGATATATGTACCGAAGGGGAGGTATTTGCTTGACTCTATGGCCTTTAAAGGTGACTGCAAAACCTCACATATGACTTTTCGGATTGATGGAACACTAGTGGCTTCGCCTGATTACCGAGTACTAGGCCAAGCTAACAACTGGTTCAGTTTTGAAGGAGTTACTGGGGTAAACATTGTCGGAGGGGCGCTTGATGCTAAGGGTTCCGCCTTGTGGGCTTGCAAATTAAGTACCGAAACCACCAGCTGTCCTAATGGAGCCACGGATGTACTCATTCAAGGCGTCAAAATTATTGCTGCTGGCAATAGCCCTAACACTGACGGCATTCATGTCCAATTTTCCAAAAATGTTGCAATCTTCGACACCTCCATCAAAACTGGGGACGACTGTGTCTCTATTGGCCCTGGTACCACTACAAAAAAATATGATCCGTCGAAAGACGTGGTCAGAAAAGACCATTTCTCTTGTAGTGGAATAAGTGGAATTATCTGTTCCTTAACAAGATATTTGTTCCTAGACAAGAAGGGTACCCTCCTAGACAAGATATATGCTTTTGGACGAGATATTTCCCCTCGGACACGATATTTCTTCCTCAACAGGATATTTGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

219

Amino Acids

23.69

Weight (kDa)

8.86

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	13 - 93	8.8e-08	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	101 - 153	3.7e-14	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc65I	GGTACC	2 cut(s)	452, 572
AccB1I	GGYRCC	2 cut(s)	452, 572
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	7 cut(s)	21, 57, 168, 277, 315, 454, 574
AfiI	CCNNNNNNNGG	2 cut(s)	23, 258
AgsI	TTSAA	2 cut(s)	200, 323
AhlI	ACTAGT	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	2 cut(s)	179, 291
AluI	AGCT	2 cut(s)	179, 291
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	87, 172, 445
ApeKI	GCWGC	2 cut(s)	13, 341
Asp718I	GGTACC	2 cut(s)	452, 572
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	452, 572
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	128, 422
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	442
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	4 cut(s)	143, 170, 560, 581
BfoI	RGCGCY	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	14, 342
BlsI	GCNGC	2 cut(s)	15, 343
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	5 cut(s)	28, 250, 304, 454, 574
BmrFI	CCNGG	1 cut(s)	450
BmrI	ACTGGG	2 cut(s)	219, 432
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	2 cut(s)	219, 432
Bpu10I	CCTNAGC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	4 cut(s)	33, 306, 448, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 258
Bse1I	ACTGG	3 cut(s)	191, 214, 427
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	4 cut(s)	33, 306, 448, 617
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	23, 258
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	191, 214, 427
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	3 cut(s)	89, 174, 447
BshNI	GGYRCC	2 cut(s)	452, 572
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	23, 258
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	89, 174, 447
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	89, 174, 447
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	5 cut(s)	28, 250, 304, 454, 574
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	2 cut(s)	452, 572
BsrI	ACTGG	3 cut(s)	191, 214, 427
BssECI	CCNNGG	4 cut(s)	33, 306, 448, 617
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	265, 346
BstDEI	CTNAG	2 cut(s)	45, 243
BstDSI	CCRYGG	2 cut(s)	33, 306
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 239, 260
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	89, 174, 447
BtgI	CCRYGG	2 cut(s)	33, 306
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	265, 346
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	7 cut(s)	20, 56, 167, 276, 314, 453, 573
CviAII	CATG	2 cut(s)	5, 374
CviQI	GTAC	7 cut(s)	20, 56, 167, 276, 314, 453, 573
DdeI	CTNAG	2 cut(s)	45, 243
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DraI	TTTAAA	1 cut(s)	94
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 377
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	2 cut(s)	4, 373
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	14, 342
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	14, 342
FspBI	CTAG	4 cut(s)	143, 170, 560, 581
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	2 cut(s)	14, 342
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	89, 174, 447
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	8, 377
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	38, 80
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	5 cut(s)	46, 129, 227, 494, 621
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	55, 194, 562
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	22, 486
HpyCH4V	TGCA	4 cut(s)	4, 105, 267, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 239, 260
HpyF3I	CTNAG	2 cut(s)	45, 243
HpySE526I	ACGT	2 cut(s)	22, 486
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	8, 377
HspAI	GCGC	1 cut(s)	233
KpnI	GGTACC	2 cut(s)	456, 576
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	26, 302
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	4 cut(s)	143, 170, 560, 581
MaeII	ACGT	2 cut(s)	22, 486
MaeIII	GTNAC	2 cut(s)	98, 205
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	394, 625
MluCI	AATT	4 cut(s)	269, 333, 380, 528
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	40, 52, 60, 121, 221, 421, 587, 627, 647
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	93, 272, 542, 658
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	10, 239, 260
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	8, 377
NlaIV	GGNNCC	5 cut(s)	28, 250, 304, 454, 574
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	38
PflFI	GACNNNGTC	2 cut(s)	434, 488
PkrI	GCNGC	2 cut(s)	15, 343
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	5 cut(s)	28, 250, 304, 454, 574
PspPI	GGNCC	1 cut(s)	446
PsyI	GACNNNGTC	2 cut(s)	434, 488
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	7 cut(s)	21, 57, 168, 277, 315, 454, 574
RsaNI	GTAC	7 cut(s)	20, 56, 167, 276, 314, 453, 573
SaqAI	TTAA	4 cut(s)	93, 272, 542, 658
SatI	GCNGC	2 cut(s)	14, 342
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	446
ScaI	AGTACT	1 cut(s)	168
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	8 cut(s)	25, 71, 100, 113, 181, 293, 413, 489
SfaNI	GCATC	1 cut(s)	229
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	4 cut(s)	269, 333, 380, 528
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	4 cut(s)	143, 170, 560, 581
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	25, 489
TaqI	TCGA	2 cut(s)	405, 479
TasI	AATT	4 cut(s)	269, 333, 380, 528
TatI	WGTACW	2 cut(s)	166, 313
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	4 cut(s)	93, 272, 542, 658
Tru9I	TTAA	4 cut(s)	93, 272, 542, 658
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	13, 341
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	3 cut(s)	50, 323, 465
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	2 cut(s)	434, 488
XspI	CTAG	4 cut(s)	143, 170, 560, 581
ZrmI	AGTACT	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.