Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

631263 .. 632986

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G005500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTGAATGTTACAAATTGTCTTTACAGAGTTGTAGTATTGATGATTCTACAATCATTGGTTGTTGAGAGTGCATTCATTTACAATGTCCTAAGTTTTGGAGCTAAGCCTAATGGTGCAACGGATTCCACCCAAGCTTTTGTTGATGCATGGTCTGCAGCTTGTGCCTCTAACGATTCCACTACCATAAGTGTACCAAAAGGGAGGTATTTGCTTCCCTCTGCTATCAAGTTTAGAGGTGACAAATGCAAAACCCTAGATATTACTTTCCAGATCGACGGAACGTTGATTGCTTCATCTGATTACCGTATTCTAGGCCAAGCTAACAACTGGCTCAGCTTCGAACGAGTTACCGGTGTTTCCATCGTTGGAGGCACACTTGATGCCAAAGGTACTGCCTTGTGGGCTTGCAAGTTAGCTGCAAGCACTGGCTGTCCCAACGGAGCCACGAGTCTGAGATTTACAAACTCCAAAAACATTAGCATCAATGGACTAACGTCGTTGAACAGCCAAATGTTCCACATTGTGGTAAACGGTTGCCAAGATGTTTACATTCGAGGAGTCAAAGTCAATGCGGCTGGCAATAGCCCAAACACTGATGGCATCCATGTCCAATTGTCAAGAAATGTTGCAATTTTCAACACATCCATCAAAACTGGTGATGATTGCGTCTCTATTGGCCCTGGCATGAAGGACTTGTGGGTCGAACAAATATCATGTGGACCTGGCCATGGCATTAGCATAGGGAGTTTGGCCAAAGACCTGGAAGAGGAAGGAGTTCAAAATGTGACGGTTAGAAACGCAATTTTCAAGGGTACTCAAAATGGGCTGAGGATTAAGTCTTGGCCTAGACCTAGCAGCGGCTTTGTCCAAGGTGTTCAATTTATTGATGCTGTAATGCTTAATGTCCAAAATCCCATTGTAATTGATCAAAAATACTGCCCACGCAATATCAACTGCCCTGCTCAGGCATCAGGTGTGAAAATCAGTGACGTATTGTACCGAAACATTCAAGGAACATCAGGAAGAGCAGTAGCAATAAAATTCGATTGCAGCGCAACAAATCCATGCAGTGGGATACGACTCGAAAACGTGAGTTTGACCTACCGGAATCAAGTGGTTCAATCACATTGTACCAATGTAAATGGAAATACTTCTGGCATTGTTCAACCAAATAGTTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

396

Amino Acids

42.17

Weight (kDa)

8.81

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	701
AccB7I	CCANNNNNTGG	2 cut(s)	526, 1073
AciI	CCGC	2 cut(s)	575, 861
AclI	AACGTT	1 cut(s)	284
AcoI	YGGCCR	2 cut(s)	727, 753
AcsI	RAATTY	1 cut(s)	1043
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	5 cut(s)	195, 394, 817, 1001, 1135
AfiI	CCNNNNNNNGG	6 cut(s)	526, 731, 769, 860, 967, 1073
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	8 cut(s)	505, 640, 782, 811, 881, 1013, 1124, 1169
AjnI	CCWGG	3 cut(s)	682, 724, 762
AluBI	AGCT	6 cut(s)	104, 137, 161, 323, 339, 419
AluI	AGCT	6 cut(s)	104, 137, 161, 323, 339, 419
Alw26I	GTCTC	1 cut(s)	676
AoxI	GGCC	5 cut(s)	316, 679, 727, 753, 845
ApeKI	GCWGC	4 cut(s)	158, 419, 858, 1053
ApoI	RAATTY	1 cut(s)	1043
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	2 cut(s)	777, 1153
AspLEI	GCGC	1 cut(s)	1058
AspS9I	GGNCC	2 cut(s)	680, 722
AsuHPI	GGTGA	3 cut(s)	16, 251, 671
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	722
BalI	TGGCCA	2 cut(s)	729, 755
BauI	CACGAG	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	830
BbvI	GCAGC	4 cut(s)	170, 406, 870, 1065
BccI	CCATC	3 cut(s)	371, 593, 656
BciT130I	CCWGG	3 cut(s)	684, 726, 764
BciVI	GTATCC	1 cut(s)	1071
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	4 cut(s)	257, 314, 849, 855
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	1071
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	6 cut(s)	159, 420, 576, 859, 862, 1054
BlpI	GCTNAGC	2 cut(s)	105, 335
BlsI	GCNGC	6 cut(s)	160, 421, 577, 860, 863, 1055
Bme1390I	CCNGG	3 cut(s)	684, 726, 764
Bme18I	GGWCC	1 cut(s)	722
BmgT120I	GGNCC	2 cut(s)	680, 722
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	3 cut(s)	684, 726, 764
BmsI	GCATC	6 cut(s)	136, 373, 492, 612, 880, 980
BoxI	GACNNNNGTC	1 cut(s)	496
Bpu10I	CCTNAGC	2 cut(s)	830, 966
Bpu1102I	GCTNAGC	2 cut(s)	105, 335
Bpu14I	TTCGAA	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	682, 730, 871
BsaWI	WCCGGW	2 cut(s)	353, 1107
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	6 cut(s)	526, 731, 769, 860, 967, 1073
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	335, 433, 661
BseBI	CCWGG	3 cut(s)	684, 726, 764
BseDI	CCNNGG	3 cut(s)	682, 730, 871
BseGI	GGATG	2 cut(s)	603, 644
BseLI	CCNNNNNNNGG	6 cut(s)	526, 731, 769, 860, 967, 1073
BseMII	CTCAG	4 cut(s)	349, 446, 821, 980
BseNI	ACTGG	3 cut(s)	335, 433, 661
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	4 cut(s)	170, 406, 870, 1065
BshFI	GGCC	5 cut(s)	318, 681, 729, 755, 847
BshTI	ACCGGT	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	354, 1108
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	6 cut(s)	526, 731, 769, 860, 967, 1073
BsmAI	GTCTC	1 cut(s)	676
BsmBI	CGTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	5 cut(s)	318, 681, 729, 755, 847
Bsp119I	TTCGAA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	273, 928
Bsp1720I	GCTNAGC	2 cut(s)	105, 335
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	2 cut(s)	575, 861
BspANI	GGCC	5 cut(s)	318, 681, 729, 755, 847
BspCNI	CTCAG	4 cut(s)	348, 447, 822, 979
BspLI	GGNNCC	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	1021
BspT104I	TTCGAA	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	335, 433, 661
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	682, 730, 871
BssMI	GATC	2 cut(s)	273, 928
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	2 cut(s)	730, 871
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	3 cut(s)	684, 726, 764
Bst4CI	ACNGT	3 cut(s)	308, 536, 793
Bst6I	CTCTTC	2 cut(s)	762, 1021
BstAPI	GCANNNNNTGC	2 cut(s)	155, 164
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	409, 424, 580
BstDEI	CTNAG	6 cut(s)	92, 105, 335, 455, 830, 966
BstDSI	CCRYGG	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	2 cut(s)	603, 644
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	2 cut(s)	276, 931
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	2 cut(s)	273, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 164, 404
BstNI	CCWGG	3 cut(s)	684, 726, 764
BstPAI	GACNNNNGTC	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	682, 724, 762
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	170, 406, 870, 1065
BstXI	CCANNNNNNTGG	1 cut(s)	763
BsuI	GTATCC	1 cut(s)	1071
BsuRI	GGCC	5 cut(s)	318, 681, 729, 755, 847
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	2 cut(s)	603, 644
BtsI	GCAGTG	1 cut(s)	1078
BtsIMutI	CAGTG	4 cut(s)	426, 594, 994, 1078
Cac8I	GCNNGC	3 cut(s)	409, 424, 580
CfoI	GCGC	1 cut(s)	1058
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	680, 722
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	5 cut(s)	194, 393, 816, 1000, 1134
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	6 cut(s)	150, 608, 688, 717, 731, 1068
CviQI	GTAC	5 cut(s)	194, 393, 816, 1000, 1134
DdeI	CTNAG	6 cut(s)	92, 105, 335, 455, 830, 966
DpnI	GATC	2 cut(s)	275, 930
DpnII	GATC	2 cut(s)	273, 928
DraIII	CACNNNGTG	1 cut(s)	526
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	2 cut(s)	727, 753
Eam1104I	CTCTTC	2 cut(s)	762, 1021
EarI	CTCTTC	2 cut(s)	762, 1021
Eco130I	CCWWGG	2 cut(s)	730, 871
Eco47I	GGWCC	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoRII	CCWGG	3 cut(s)	682, 724, 762
EcoT14I	CCWWGG	2 cut(s)	730, 871
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	730, 871
Esp3I	CGTCTC	1 cut(s)	676
FaeI	CATG	6 cut(s)	153, 611, 691, 720, 734, 1071
FaiI	YATR	8 cut(s)	151, 188, 609, 689, 718, 732, 743, 1069
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	6 cut(s)	149, 607, 687, 716, 730, 1067
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	6 cut(s)	159, 420, 576, 859, 862, 1054
FokI	GGATG	2 cut(s)	590, 631
Fsp4HI	GCNGC	6 cut(s)	159, 420, 576, 859, 862, 1054
FspBI	CTAG	4 cut(s)	257, 314, 849, 855
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	6 cut(s)	159, 420, 576, 859, 862, 1054
HaeIII	GGCC	5 cut(s)	318, 681, 729, 755, 847
HapII	CCGG	2 cut(s)	354, 1108
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	1 cut(s)	1058
Hin1II	CATG	6 cut(s)	153, 611, 691, 720, 734, 1071
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	7 cut(s)	46, 125, 176, 451, 561, 1083, 1111
HpaII	CCGG	2 cut(s)	354, 1108
HphI	GGTGA	3 cut(s)	16, 251, 671
Hpy166II	GTNNAC	4 cut(s)	194, 532, 550, 722
Hpy188I	TCNGA	2 cut(s)	301, 456
Hpy188III	TCNNGA	3 cut(s)	271, 621, 1023
Hpy8I	GTNNAC	4 cut(s)	194, 532, 550, 722
Hpy99I	CGWCG	2 cut(s)	281, 502
HpyAV	CCTTC	2 cut(s)	685, 767
HpyCH4III	ACNGT	3 cut(s)	308, 536, 793
HpyCH4IV	ACGT	4 cut(s)	284, 497, 993, 1092
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 164, 404
HpyF3I	CTNAG	6 cut(s)	92, 105, 335, 455, 830, 966
HpySE526I	ACGT	4 cut(s)	284, 497, 993, 1092
Hsp92II	CATG	6 cut(s)	153, 611, 691, 720, 734, 1071
HspAI	GCGC	1 cut(s)	1056
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	2 cut(s)	273, 928
LguI	GCTCTTC	1 cut(s)	1021
LmnI	GCTCC	2 cut(s)	101, 443
Lsp1109I	GCAGC	4 cut(s)	170, 406, 870, 1065
LweI	GCATC	6 cut(s)	136, 373, 492, 612, 880, 980
MaeI	CTAG	4 cut(s)	257, 314, 849, 855
MaeII	ACGT	4 cut(s)	284, 497, 993, 1092
MaeIII	GTNAC	5 cut(s)	10, 239, 349, 787, 989
MalI	GATC	2 cut(s)	275, 930
MboI	GATC	2 cut(s)	273, 928
MboII	GAAGA	2 cut(s)	779, 1038
MfeI	CAATTG	1 cut(s)	614
MlsI	TGGCCA	2 cut(s)	729, 755
MluCI	AATT	7 cut(s)	16, 614, 633, 804, 881, 924, 1043
MluNI	TGGCCA	2 cut(s)	729, 755
MlyI	GAGTC	3 cut(s)	460, 570, 1077
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	178, 198, 229, 230, 365, 551, 763, 825
Mox20I	TGGCCA	2 cut(s)	729, 755
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	2 cut(s)	777, 1153
MscI	TGGCCA	2 cut(s)	729, 755
MseI	TTAA	2 cut(s)	837, 903
Msp20I	TGGCCA	2 cut(s)	729, 755
MspA1I	CMGCKG	1 cut(s)	861
MspI	CCGG	2 cut(s)	354, 1108
MspR9I	CCNGG	3 cut(s)	684, 726, 764
MunI	CAATTG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	3 cut(s)	684, 726, 764
MwoI	GCNNNNNNNGC	3 cut(s)	155, 164, 404
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	273, 928
NlaIII	CATG	6 cut(s)	153, 611, 691, 720, 734, 1071
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	3 cut(s)	239, 787, 989
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	777, 1153
PfeI	GAWTC	4 cut(s)	46, 125, 176, 1111
PflMI	CCANNNNNTGG	2 cut(s)	526, 1073
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	6 cut(s)	160, 421, 577, 860, 863, 1055
PleI	GAGTC	3 cut(s)	459, 569, 1077
PpsI	GAGTC	3 cut(s)	459, 569, 1077
PshAI	GACNNNNGTC	1 cut(s)	496
Psp1406I	AACGTT	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	682, 724, 762
PspGI	CCWGG	3 cut(s)	682, 724, 762
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	680, 722
PstI	CTGCAG	1 cut(s)	160
RsaI	GTAC	5 cut(s)	195, 394, 817, 1001, 1135
RsaNI	GTAC	5 cut(s)	194, 393, 816, 1000, 1134
SapI	GCTCTTC	1 cut(s)	1021
SaqAI	TTAA	2 cut(s)	837, 903
SatI	GCNGC	6 cut(s)	159, 420, 576, 859, 862, 1054
Sau3AI	GATC	2 cut(s)	273, 928
Sau96I	GGNCC	2 cut(s)	680, 722
SchI	GAGTC	3 cut(s)	460, 570, 1077
ScrFI	CCNGG	3 cut(s)	684, 726, 764
SfaNI	GCATC	6 cut(s)	136, 373, 492, 612, 880, 980
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	722
Sse9I	AATT	7 cut(s)	16, 614, 633, 804, 881, 924, 1043
SsiI	CCGC	2 cut(s)	575, 861
SspMI	CTAG	4 cut(s)	257, 314, 849, 855
StyD4I	CCNGG	3 cut(s)	682, 724, 762
StyI	CCWWGG	2 cut(s)	730, 871
TaaI	ACNGT	3 cut(s)	308, 536, 793
TaiI	ACGT	4 cut(s)	287, 500, 996, 1095
TaqI	TCGA	6 cut(s)	276, 342, 556, 705, 1047, 1086
TasI	AATT	7 cut(s)	16, 614, 633, 804, 881, 924, 1043
TauI	GCSGC	2 cut(s)	578, 864
TfiI	GAWTC	4 cut(s)	46, 125, 176, 1111
Tru1I	TTAA	2 cut(s)	837, 903
Tru9I	TTAA	2 cut(s)	837, 903
TscAI	CASTG	4 cut(s)	433, 601, 994, 1078
TseFI	GTSAC	3 cut(s)	239, 787, 989
TseI	GCWGC	4 cut(s)	158, 419, 858, 1053
Tsp45I	GTSAC	3 cut(s)	239, 787, 989
TspDTI	ATGAA	3 cut(s)	67, 285, 704
TspGWI	ACGGA	3 cut(s)	137, 294, 456
TspRI	CASTG	4 cut(s)	433, 601, 994, 1078
Van91I	CCANNNNNTGG	2 cut(s)	526, 1073
VpaK11BI	GGWCC	1 cut(s)	722
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	1 cut(s)	1043
XmnI	GAANNNNTTC	2 cut(s)	777, 1153
XspI	CTAG	4 cut(s)	257, 314, 849, 855
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.