Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8400735.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 713

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8400735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 448 bp

cattgggagtttaggcaaggacctggaggaggatggagtgcaaaatgtaacggtcaaaactgttacatttacaggtactcaaaatggtctgagaatcaaatcatggggaagacccagtactgggtttgctaagaacattcttttccaacatgctgtcatgttcaatgtccaaaatccgatcgttattgatcaaaattattgcccagacgaaaaagggtgccctggtcaggtttcgggagttcaaattagtgacgtgacatatcaaaacatccacggcacatcagcaacacaagttgctgtgaaattcgactgtagttcttggtacccttgtagcaagatcacactggatgatgtgaagctcagttacaagaaccaagcagccgaagcttcatgtagccatgccggtggaacagctgtgggtatggttcagccgacaagttgtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

148

Amino Acids

15.85

Weight (kDa)

6.3

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	2 cut(s)	217, 322
AcsI	RAATTY	1 cut(s)	303
AfaI	GTAC	3 cut(s)	77, 119, 324
AfiI	CCNNNNNNNGG	4 cut(s)	29, 120, 121, 227
AgsI	TTSAA	2 cut(s)	164, 243
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	22, 221
AluBI	AGCT	3 cut(s)	359, 387, 414
AluI	AGCT	3 cut(s)	359, 387, 414
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	303
ArsI	GACNNNNNNTTYG	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	314, 347
BanI	GGYRCC	2 cut(s)	217, 322
BarI	GAAGNNNNNNTAC	4 cut(s)	101, 133, 348, 380
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	24, 223
BclI	TGATCA	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	24, 223
Bme18I	GGWCC	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	219, 324
BmrFI	CCNGG	2 cut(s)	24, 223
BmrI	ACTGGG	2 cut(s)	109, 130
BmuI	ACTGGG	2 cut(s)	109, 130
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	221, 272
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 120, 121, 227
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	3 cut(s)	115, 125, 349
BseBI	CCWGG	2 cut(s)	24, 223
BseDI	CCNNGG	2 cut(s)	221, 272
BseGI	GGATG	3 cut(s)	38, 268, 353
BseLI	CCNNNNNNNGG	4 cut(s)	29, 120, 121, 227
BseMII	CTCAG	2 cut(s)	81, 374
BseNI	ACTGG	3 cut(s)	115, 125, 349
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	181
BshNI	GGYRCC	2 cut(s)	217, 322
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	4 cut(s)	29, 120, 121, 227
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	178, 188, 337
BspCNI	CTCAG	2 cut(s)	82, 373
BspLI	GGNNCC	2 cut(s)	219, 324
BspT107I	GGYRCC	2 cut(s)	217, 322
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	115, 125, 349
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	221, 272
BssMI	GATC	3 cut(s)	178, 188, 337
Bst2UI	CCWGG	2 cut(s)	24, 223
Bst4CI	ACNGT	3 cut(s)	53, 62, 312
BstDEI	CTNAG	3 cut(s)	90, 130, 360
BstDSI	CCRYGG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	38, 268, 353
BstKTI	GATC	3 cut(s)	181, 191, 340
BstMBI	GATC	3 cut(s)	178, 188, 337
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	2 cut(s)	24, 223
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	22, 221
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	38, 268, 353
BtsIMutI	CAGTG	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	76, 118, 323
CviAII	CATG	5 cut(s)	103, 150, 158, 391, 399
CviJI	RGCY	6 cut(s)	359, 381, 387, 397, 414, 431
CviKI_1	RGCY	6 cut(s)	359, 381, 387, 397, 414, 431
CviQI	GTAC	3 cut(s)	76, 118, 323
DdeI	CTNAG	3 cut(s)	90, 130, 360
DpnI	GATC	3 cut(s)	180, 190, 339
DpnII	GATC	3 cut(s)	178, 188, 337
Eco47I	GGWCC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	22, 221
FaeI	CATG	5 cut(s)	106, 153, 161, 394, 402
FaiI	YATR	7 cut(s)	104, 151, 159, 260, 392, 400, 423
FatI	CATG	5 cut(s)	102, 149, 157, 390, 398
FbaI	TGATCA	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	3 cut(s)	45, 255, 360
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	45
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	5 cut(s)	106, 153, 161, 394, 402
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	91, 178
Hpy188III	TCNNGA	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	53, 62, 312
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	3 cut(s)	90, 130, 360
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	106, 153, 161, 394, 402
KpnI	GGTACC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	178, 188, 337
Lsp1109I	GCAGC	1 cut(s)	390
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	5 cut(s)	47, 62, 249, 254, 363
MalI	GATC	3 cut(s)	180, 190, 339
MboI	GATC	3 cut(s)	178, 188, 337
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	194, 244, 303
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	20, 23
MslI	CAYNNNNRTG	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	24, 223
MvaI	CCWGG	2 cut(s)	24, 223
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	3 cut(s)	178, 188, 337
NlaIII	CATG	5 cut(s)	106, 153, 161, 394, 402
NlaIV	GGNNCC	2 cut(s)	219, 324
NmuCI	GTSAC	2 cut(s)	249, 254
NspI	RCATGY	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	380
Ple19I	CGATCG	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	22, 221
PspGI	CCWGG	2 cut(s)	22, 221
PspN4I	GGNNCC	2 cut(s)	219, 324
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	3 cut(s)	77, 119, 324
RsaNI	GTAC	3 cut(s)	76, 118, 323
RseI	CAYNNNNRTG	1 cut(s)	403
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	3 cut(s)	178, 188, 337
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	24, 223
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	7 cut(s)	25, 77, 232, 256, 361, 389, 416
SfcI	CTRYAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	194, 244, 303
StyD4I	CCNGG	2 cut(s)	22, 221
TaaI	ACNGT	3 cut(s)	53, 62, 312
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	307
TasI	AATT	3 cut(s)	194, 244, 303
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	249, 254
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	249, 254
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.