Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

5456022 .. 5456786

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTATTTCCGACGAAAATTCCCTATTTCCGACCATTTTTTGTCATCAGAAATTACCGTCTGTACCGGTACCAAGGACTTATGGATGGAACGCATATCATGTGGACCTGGCCATGGCATTAGCATAGGGAGCCTGGCTAAAGACTTGGAAGAGGAAGGAGTACAAAATGTAACAGTTAAAAATGCAATTTTGAAGGATACCACAAATGGGCTGAGGATCAAATCTTGGGCAAGACCTAGCACCGGGTTTGTCCAAGGTGTTCGATTCCTTGATGTCGTAATGCTTAATGTCCAAAATCCCATCATAATTGACCAGAATTACTGCCCACACAACCTCAACTGTCCTGGTCAGGTATCTGGTGTCAAAGTTAGCGATATACTGTACCAGAACATTCGAGGCACATCAACAACAGCAGTTGCAGTAAAATTTGATTGCAGTGCAATAAATCCATGCAGTGGGATAAGACTCGAAAATGTGAATTTGACTTGCCGGAAGCAAGTAGTTCAATCATACTGTACAAATGTAAATGGAAAGAGTGTTGGCACTATTCCACCAAGCAGTTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

189

Amino Acids

20.67

Weight (kDa)

8.76

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	18 - 177	5.5e-46	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	455
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	17, 425, 478
AfaI	GTAC	5 cut(s)	64, 70, 162, 383, 517
AfiI	CCNNNNNNNGG	4 cut(s)	113, 207, 242, 455
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	193, 506
AjnI	CCWGG	3 cut(s)	106, 132, 343
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	109
ApoI	RAATTY	3 cut(s)	17, 425, 478
AsiGI	ACCGGT	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	79, 308
BciT130I	CCWGG	3 cut(s)	108, 134, 345
BciVI	GTATCC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	108, 134, 244, 345
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	70, 131
BmrFI	CCNGG	4 cut(s)	108, 134, 244, 345
Bpu10I	CCTNAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	72, 112, 253
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 207, 242, 455
Bse118I	RCCGGY	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	108, 134, 345
BseDI	CCNNGG	3 cut(s)	72, 112, 253
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	113, 207, 242, 455
BseMII	CTCAG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	66, 243, 490
BslI	CCNNNNNNNGG	4 cut(s)	113, 207, 242, 455
BsnI	GGCC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	515
Bsp143I	GATC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	70, 131
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	72, 112, 253
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	3 cut(s)	72, 112, 253
Bst2UI	CCWGG	3 cut(s)	108, 134, 345
Bst4CI	ACNGT	5 cut(s)	58, 175, 341, 381, 515
Bst6I	CTCTTC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	3 cut(s)	108, 134, 345
BstSCI	CCNGG	4 cut(s)	106, 132, 242, 343
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	442, 460
BtsIMutI	CAGTG	2 cut(s)	442, 460
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	5 cut(s)	63, 69, 161, 382, 516
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	3 cut(s)	99, 113, 450
CviJI	RGCY	4 cut(s)	111, 132, 137, 211
CviKI_1	RGCY	4 cut(s)	111, 132, 137, 211
CviQI	GTAC	5 cut(s)	63, 69, 161, 382, 516
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	72, 112, 253
Eco47I	GGWCC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	106, 132, 343
EcoT14I	CCWWGG	3 cut(s)	72, 112, 253
ErhI	CCWWGG	3 cut(s)	72, 112, 253
FaeI	CATG	3 cut(s)	102, 116, 453
FaiI	YATR	9 cut(s)	82, 95, 100, 114, 125, 305, 377, 451, 511
FatI	CATG	3 cut(s)	98, 112, 449
FokI	GGATG	1 cut(s)	97
FspBI	CTAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	3 cut(s)	66, 243, 490
Hin1II	CATG	3 cut(s)	102, 116, 453
HinfI	GANTC	2 cut(s)	264, 465
HpaII	CCGG	3 cut(s)	66, 243, 490
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	11, 31, 49
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	149, 187
HpyCH4III	ACNGT	5 cut(s)	58, 175, 341, 381, 515
HpyCH4V	TGCA	5 cut(s)	185, 419, 435, 440, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	102, 116, 453
KpnI	GGTACC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	7 cut(s)	17, 51, 186, 306, 316, 425, 478
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	34, 54
MnlI	CCTC	4 cut(s)	145, 207, 344, 389
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	2 cut(s)	177, 285
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	3 cut(s)	66, 243, 490
MspR9I	CCNGG	4 cut(s)	108, 134, 244, 345
MvaI	CCWGG	3 cut(s)	108, 134, 345
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	102, 116, 453
NlaIV	GGNNCC	2 cut(s)	70, 131
PfeI	GAWTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	65
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	106, 132, 343
PspGI	CCWGG	3 cut(s)	106, 132, 343
PspN4I	GGNNCC	2 cut(s)	70, 131
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	5 cut(s)	64, 70, 162, 383, 517
RsaNI	GTAC	5 cut(s)	63, 69, 161, 382, 516
SaqAI	TTAA	2 cut(s)	177, 285
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	4 cut(s)	108, 134, 244, 345
SetI	ASST	5 cut(s)	109, 238, 259, 336, 354
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	7 cut(s)	17, 51, 186, 306, 316, 425, 478
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	106, 132, 242, 343
StyI	CCWWGG	3 cut(s)	72, 112, 253
TaaI	ACNGT	5 cut(s)	58, 175, 341, 381, 515
TaqI	TCGA	3 cut(s)	262, 394, 468
TasI	AATT	7 cut(s)	17, 51, 186, 306, 316, 425, 478
TatI	WGTACW	2 cut(s)	160, 515
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	177, 285
Tru9I	TTAA	2 cut(s)	177, 285
TscAI	CASTG	2 cut(s)	442, 460
TspRI	CASTG	2 cut(s)	442, 460
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	3 cut(s)	17, 425, 478
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.