Rroxscaffold_6G00390420

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016243
Physical Location & Seq
Reverse (-)
5425300 .. 5429622
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390420.1

Sequence Viewer

Length: 1065 bp
ATGCAAAATGCTCGAGAGCTTCATCTTGCTACCGCTCTCGTCCCAATTTTCCGCCACTTGCGGCCATTTTCGACCGCTTCCGACTTGTCTCCAACCTTCTCCGATTTCATTCTGCTGTCATTTAGGGATATGGATTTCAATCTAGTTGGGAACTTACAGCTGTCTAACAAAGAAGTGACAGAAAGGGAACCTATCGGAGTAAGTGAGCAGGGAAAATTCTTAAAGATGTCAGGTGAGATAATCCTCTTCCATCTTATATTTTACTGTTGCAAGCTTGTACAAGTGAGTCCTTCCAGCTCAACTGAGAAGACAAGACTACCTAGTATTCAGAGTATGAATCCTAAGCTCACTCTCCCAAGTGTGCAGCTACTGAGTAACTCAAAGAAAACCATCTCTACCCGGAAAGTTTCCAACTGTAGACTTCGTAGACCTGGCATGGTGAATGTCATGGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGAGTTTAAAGGTCGTGTTGTGGCAGCAGCAGCTGGTAATGCTGCTATATGTCAGGATTTGTTATGGATGGTACAAAATGAAGTGGAGATTGAGGATAATATATACACTATGAAAGCAGCATGTGAGAGGTATATTGATGAGTGGAAGAGAAAGAAGAAACAGGAAAATAAGGATGAACATTTCCCTTCAACTAATGGGCTCTATAACTGGGAAGGGCAGCAGGCTGTTATAATATTTGTTGGATTCCGCAACCAAATGGCAACAGAGTTGGGAAGAGTCATGGCATGTGGGGCTGGTAGTAGCTGGGCTGAAAACTATCTGGGTTCACAGACGAGGAGAGATGATTTTACCAAGTTTGATTTTGTTCACCTTGTCAGGCAATCAATCACACTTTCCAGTTTGCATAGTCCTTCTACGGGTGGTAGGATTACAGTGCTAAGATTGTCTCGTGGAGGTGACAGGGAAATATTTCCCATGCATGATCATTCCGGGCATGATGGAGACCGAATGCAAGCACCGGTTCCCGGATGGTTATGTCCGGTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.87

Weight (kDa)

8.11

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 2 cut(s) 418, 427
AciI CCGC 5 cut(s) 33, 52, 61, 75, 763
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 2 cut(s) 215, 459
AcuI CTGAAG 2 cut(s) 450, 522
AfaI GTAC 2 cut(s) 279, 588
AfiI CCNNNNNNNGG 2 cut(s) 932, 1040
AgeI ACCGGT 1 cut(s) 1033
AgsI TTSAA 3 cut(s) 139, 458, 705
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 8 cut(s) 19, 160, 274, 297, 346, 367, 548, 819
AluI AGCT 8 cut(s) 19, 160, 274, 297, 346, 367, 548, 819
Alw26I GTCTC 3 cut(s) 93, 966, 1011
AlwNI CAGNNNCTG 2 cut(s) 370, 548
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 7 cut(s) 364, 539, 542, 545, 557, 632, 733
ApoI RAATTY 2 cut(s) 215, 459
AsiGI ACCGGT 1 cut(s) 1033
Asp700I GAANNNNTTC 1 cut(s) 984
AsuC2I CCSGG 3 cut(s) 400, 1006, 1041
AsuHPI GGTGA 4 cut(s) 245, 451, 875, 983
AvaI CYCGRG 1 cut(s) 12
BanII GRGCYC 1 cut(s) 717
BauI CACGAG 1 cut(s) 963
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 7 cut(s) 376, 544, 551, 554, 557, 644, 745
BccI CCATC 6 cut(s) 258, 398, 476, 577, 1007, 1038
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 432
BclI TGATCA 1 cut(s) 997
BcnI CCSGG 3 cut(s) 400, 1006, 1041
BcoDI GTCTC 3 cut(s) 93, 966, 1011
BfaI CTAG 3 cut(s) 143, 321, 1063
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 8 cut(s) 62, 365, 540, 543, 546, 558, 633, 734
BlsI GCNGC 8 cut(s) 63, 366, 541, 544, 547, 559, 634, 735
Bme1390I CCNGG 4 cut(s) 400, 432, 1006, 1041
BmeT110I CYCGRG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 189, 1038
BmrFI CCNGG 4 cut(s) 400, 432, 1006, 1041
BmrI ACTGGG 1 cut(s) 733
BmuI ACTGGG 1 cut(s) 733
BpiI GAAGAC 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 3 cut(s) 400, 1006, 1041
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 1011
BsaJI CCNNGG 1 cut(s) 513
BsaWI WCCGGW 2 cut(s) 1033, 1054
Bsc4I CCNNNNNNNGG 2 cut(s) 932, 1040
Bse118I RCCGGY 1 cut(s) 1033
Bse1I ACTGG 2 cut(s) 728, 912
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 3 cut(s) 588, 694, 1049
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 932, 1040
BseMII CTCAG 2 cut(s) 294, 362
BseNI ACTGG 2 cut(s) 728, 912
BseRI GAGGAG 1 cut(s) 865
BseXI GCAGC 7 cut(s) 376, 544, 551, 554, 557, 644, 745
BseYI CCCAGC 1 cut(s) 819
BsgI GTGCAG 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 5 cut(s) 400, 1005, 1034, 1041, 1055
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 932, 1040
BsmAI GTCTC 3 cut(s) 93, 966, 1011
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 1011
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 717
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 997
BspACI CCGC 5 cut(s) 33, 52, 61, 75, 763
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 295, 363
BspLI GGNNCC 2 cut(s) 189, 1038
BspTNI GGTCTC 1 cut(s) 1011
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 1033
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 2 cut(s) 728, 912
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 1 cut(s) 997
BssSI CACGAG 1 cut(s) 963
BssT1I CCWWGG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 266, 416, 949
Bst6I CTCTTC 3 cut(s) 251, 656, 784
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 3 cut(s) 272, 738, 1029
BstDEI CTNAG 4 cut(s) 303, 342, 371, 953
BstF5I GGATG 3 cut(s) 588, 694, 1049
BstKTI GATC 1 cut(s) 1000
BstMAI GTCTC 3 cut(s) 93, 966, 1011
BstMBI GATC 1 cut(s) 997
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 497, 545, 554, 806
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 639, 804
BstSCI CCNGG 4 cut(s) 398, 430, 1004, 1039
BstSFI CTRYAG 1 cut(s) 415
BstV1I GCAGC 7 cut(s) 376, 544, 551, 554, 557, 644, 745
BstV2I GAAGAC 1 cut(s) 314
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 3 cut(s) 588, 694, 1049
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 3 cut(s) 272, 738, 1029
CaiI CAGNNNCTG 2 cut(s) 370, 548
Cfr10I RCCGGY 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 278, 587
CspAI ACCGGT 1 cut(s) 1033
CviAII CATG 8 cut(s) 436, 448, 636, 796, 801, 991, 995, 1010
CviQI GTAC 2 cut(s) 278, 587
DdeI CTNAG 4 cut(s) 303, 342, 371, 953
DpnI GATC 1 cut(s) 999
DpnII GATC 1 cut(s) 997
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 3 cut(s) 251, 656, 784
EarI CTCTTC 3 cut(s) 251, 656, 784
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 717
Eco31I GGTCTC 1 cut(s) 1011
Eco57I CTGAAG 2 cut(s) 450, 522
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 996
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 8 cut(s) 439, 451, 639, 799, 804, 994, 998, 1013
FaqI GGGAC 1 cut(s) 26
FatI CATG 8 cut(s) 435, 447, 635, 795, 800, 990, 994, 1009
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 2 cut(s) 418, 427
Fnu4HI GCNGC 8 cut(s) 62, 365, 540, 543, 546, 558, 633, 734
FokI GGATG 3 cut(s) 595, 701, 1056
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 8 cut(s) 62, 365, 540, 543, 546, 558, 633, 734
FspBI CTAG 3 cut(s) 143, 321, 1063
GluI GCNGC 8 cut(s) 62, 365, 540, 543, 546, 558, 633, 734
GsaI CCCAGC 1 cut(s) 823
HaeIII GGCC 1 cut(s) 64
HapII CCGG 5 cut(s) 400, 1005, 1034, 1041, 1055
Hin1II CATG 8 cut(s) 439, 451, 639, 799, 804, 994, 998, 1013
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 4 cut(s) 286, 337, 759, 792
HpaII CCGG 5 cut(s) 400, 1005, 1034, 1041, 1055
HphI GGTGA 4 cut(s) 245, 451, 875, 983
Hpy166II GTNNAC 5 cut(s) 419, 428, 842, 883, 1060
Hpy188I TCNGA 4 cut(s) 82, 103, 197, 330
Hpy188III TCNNGA 2 cut(s) 14, 569
Hpy8I GTNNAC 5 cut(s) 419, 428, 842, 883, 1060
HpyAV CCTTC 6 cut(s) 106, 300, 474, 711, 722, 936
HpyCH4III ACNGT 3 cut(s) 266, 416, 949
HpyCH4V TGCA 6 cut(s) 4, 270, 364, 919, 994, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 497, 545, 554, 806
HpyF3I CTNAG 4 cut(s) 303, 342, 371, 953
Hsp92II CATG 8 cut(s) 439, 451, 639, 799, 804, 994, 998, 1013
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 1 cut(s) 997
Lsp1109I GCAGC 7 cut(s) 376, 544, 551, 554, 557, 644, 745
MaeI CTAG 3 cut(s) 143, 321, 1063
MaeIII GTNAC 3 cut(s) 175, 374, 971
MalI GATC 1 cut(s) 999
MbiI CCGCTC 1 cut(s) 35
MboI GATC 1 cut(s) 997
MboII GAAGA 5 cut(s) 238, 319, 673, 682, 801
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 3 cut(s) 45, 215, 459
MlyI GAGTC 2 cut(s) 295, 801
MmeI TCCRAC 4 cut(s) 105, 116, 435, 736
MnlI CCTC 5 cut(s) 254, 601, 636, 843, 962
Mph1103I ATGCAT 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 2 cut(s) 221, 522
MspA1I CMGCKG 2 cut(s) 160, 548
MspI CCGG 5 cut(s) 400, 1005, 1034, 1041, 1055
MspR9I CCNGG 4 cut(s) 400, 432, 1006, 1041
Mva1269I GAATGC 1 cut(s) 1029
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 4 cut(s) 497, 545, 554, 806
NciI CCSGG 3 cut(s) 400, 1006, 1041
NdeII GATC 1 cut(s) 997
NlaIII CATG 8 cut(s) 439, 451, 639, 799, 804, 994, 998, 1013
NlaIV GGNNCC 2 cut(s) 189, 1038
NmuCI GTSAC 2 cut(s) 175, 971
NsiI ATGCAT 1 cut(s) 996
NspI RCATGY 2 cut(s) 639, 804
PaeR7I CTCGAG 1 cut(s) 12
PctI GAATGC 1 cut(s) 1029
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 2 cut(s) 337, 759
PfoI TCCNGGA 1 cut(s) 1039
PinAI ACCGGT 1 cut(s) 1033
PkrI GCNGC 8 cut(s) 63, 366, 541, 544, 547, 559, 634, 735
PleI GAGTC 2 cut(s) 294, 800
PpsI GAGTC 2 cut(s) 294, 800
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 819
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 189, 1038
PstNI CAGNNNCTG 2 cut(s) 370, 548
PvuII CAGCTG 2 cut(s) 160, 548
RsaI GTAC 2 cut(s) 279, 588
RsaNI GTAC 2 cut(s) 278, 587
SaqAI TTAA 2 cut(s) 221, 522
SatI GCNGC 8 cut(s) 62, 365, 540, 543, 546, 558, 633, 734
Sau3AI GATC 1 cut(s) 997
SchI GAGTC 2 cut(s) 295, 801
ScrFI CCNGG 4 cut(s) 400, 432, 1006, 1041
SduI GDGCHC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 3 cut(s) 45, 215, 459
SsiI CCGC 5 cut(s) 33, 52, 61, 75, 763
SspI AATATT 2 cut(s) 750, 984
SspMI CTAG 3 cut(s) 143, 321, 1063
StyD4I CCNGG 4 cut(s) 398, 430, 1004, 1039
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 266, 416, 949
TaqI TCGA 2 cut(s) 13, 71
TaqII GACCGA 1 cut(s) 1035
TasI AATT 3 cut(s) 45, 215, 459
TatI WGTACW 1 cut(s) 277
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 337, 759
Tru1I TTAA 2 cut(s) 221, 522
Tru9I TTAA 2 cut(s) 221, 522
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 2 cut(s) 175, 971
TseI GCWGC 7 cut(s) 364, 539, 542, 545, 557, 632, 733
Tsp45I GTSAC 2 cut(s) 175, 971
TspDTI ATGAA 6 cut(s) 11, 97, 350, 609, 641, 705
TspRI CASTG 1 cut(s) 954
XapI RAATTY 2 cut(s) 215, 459
XceI RCATGY 2 cut(s) 639, 804
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 2 cut(s) 418, 427
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 3 cut(s) 143, 321, 1063
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.