RchiOBHm_Chr2g0116881

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016243
Physical Location & Seq
Reverse (-)
29134392 .. 29137545
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48989

Sequence Viewer

Length: 237 bp
ATGGTGAATGTCATGGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGCGTTTAAAGGTGACAATTCCTTTAGCGGCAAAGGTACCACAATAGTAGCTCTTATTGGACGTGATGCAATCTATATTGGCTCAGACAGTCTTGTTGTTTCTGGGCACCAGGATGACCTCGATCAGCCTAGCTGCTACCAGCCCCACATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.36

Weight (kDa)

4.54

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 116, 186
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 2 cut(s) 15, 87
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 131, 213
AluI AGCT 2 cut(s) 131, 213
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 16, 104
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 2 cut(s) 116, 186
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 109, 214
BlsI GCNGC 2 cut(s) 110, 215
Bme1390I CCNGG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 118, 188
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 200
BshNI GGYRCC 2 cut(s) 116, 186
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 118, 188
BspT107I GGYRCC 2 cut(s) 116, 186
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 62, 229
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 200
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 199
Csp6I GTAC 1 cut(s) 117
CviAII CATG 3 cut(s) 13, 229, 234
CviJI RGCY 6 cut(s) 65, 131, 162, 208, 213, 223
CviKI_1 RGCY 6 cut(s) 65, 131, 162, 208, 213, 223
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraI TTTAAA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 15, 87
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 16, 232, 237
FaiI YATR 6 cut(s) 14, 73, 75, 156, 230, 235
FatI CATG 3 cut(s) 12, 228, 233
Fnu4HI GCNGC 2 cut(s) 109, 214
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 109, 214
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 109, 214
Hin1II CATG 3 cut(s) 16, 232, 237
HphI GGTGA 2 cut(s) 16, 104
Hpy188I TCNGA 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 229
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 16, 232, 237
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 168, 176, 203, 233
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 24, 97
MnlI CCTC 1 cut(s) 209
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 62, 229
NdeII GATC 1 cut(s) 202
NlaIII CATG 3 cut(s) 16, 232, 237
NlaIV GGNNCC 2 cut(s) 118, 188
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 232
PkrI GCNGC 2 cut(s) 110, 215
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 118, 188
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 109, 214
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 94, 118, 133, 145, 201, 215
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 2 cut(s) 24, 97
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 24, 97
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 92
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.