Rh2BG275700

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016243
Physical Location & Seq
Reverse (-)
29970446 .. 29982799
12354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG275700.1

Sequence Viewer

Length: 1095 bp
ATGATGAGGTTGTTGGATTGGTTTCTTCACTTCAGTGAAGACGCCCCTAAGCCCTTCAGGTTAGAAGGGCACTCCCACCTGATAAAGGTCTTCGGATTCGGCTTCCGTGATTTGCTTTCTGGTTCGCTCCGGGATATGGATTTCAATCTAGTTGGGAACTTACAGCTGTCTAACAAAGAAGTGACAGAAAGGGAACCTATCGGAGTAAGTGAGCAGGGAAAATTCTTAAAGATGTCAGTGTACAAGGGACTACTGAGTAACTCAAAGAAAACCATCTCTACCCGGAAAGTTTCCAACTGTAGACTTCGTAGACCTTGCATGGTGAATGTCATGGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGCGCTTAAAGGTGATTTGTTATGGACGGTACAAAATGAAGTGGAGATTGAGGATAATATATACACTGTGAAAGCAGCATGTGAGAGGTATATTGATGAGTGGAAGAGAAAGAAGAAAGAGGAAAATAAGGATGAACATTTCCCTTCAACTATTGGGCTCTATAGCTGGGAAGGGCAGCAGCCTGTTATAATATTTGTTGGATTCCACAACCAAATGGCAACAGAGTTGGGAAGAGTCATGGCATGTGGGGCTGGTAGTAGCTGGGCTGAAAACTATCTGGGTTCACAGACGTGGAGAGATGATTTTACCAAGTTTGATTTTGTTCACCTTGTCAGGCAATCAGTCACACTTTCCAGTTTGCATAGTCCTTCTACGGGTGGTAGGATTACAGTGCTAAGATTGTCTCGTGGAGGGGACAGGGAAATATTTCCCATGCATGATCATGTAATCAAATGCTTGGGTGACTATCAGCAGCAACTGGAAACTTTCTGCCATCCCGAAGTTAGTGGTTTGAAGAATATGCTTTTATTGGTAATCAGAAATCTGGAGTACAACATTGAGAATGAGAAGAGAGTTAGATTTGAAGTTTGGAACCAGCTGCGAGATGTCAGGGATGCACATGTAATTGGAGTTGCTAATGCAAATCCATTTAAAGGCTGCCTTGGAGATTTTGGCAACGGCATAATGATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

41.66

Weight (kDa)

6.84

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccI GTMKAC 2 cut(s) 301, 310
AcsI RAATTY 2 cut(s) 221, 342
AcuI CTGAAG 4 cut(s) 16, 40, 333, 405
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 242, 429, 950
AfiI CCNNNNNNNGG 4 cut(s) 85, 136, 773, 1052
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 5 cut(s) 145, 341, 546, 913, 983
AjiI CACGTC 1 cut(s) 690
AleI CACNNNNGTG 2 cut(s) 33, 688
AluBI AGCT 4 cut(s) 166, 564, 660, 997
AluI AGCT 4 cut(s) 166, 564, 660, 997
Alw26I GTCTC 1 cut(s) 807
AlwNI CAGNNNCTG 1 cut(s) 877
ApeKI GCWGC 6 cut(s) 473, 574, 577, 871, 997, 1056
ApoI RAATTY 2 cut(s) 221, 342
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 1 cut(s) 403
AsuC2I CCSGG 2 cut(s) 131, 283
AsuHPI GGTGA 4 cut(s) 334, 422, 716, 872
BaeGI GKGCMC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 2 cut(s) 45, 82
BbvI GCAGC 6 cut(s) 485, 586, 589, 883, 984, 1043
BccI CCATC 4 cut(s) 281, 359, 900, 1081
BceAI ACGGC 1 cut(s) 1093
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 2 cut(s) 131, 283
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 2 cut(s) 298, 559
BfoI RGCGCY 1 cut(s) 404
BisI GCNGC 6 cut(s) 474, 575, 578, 872, 998, 1057
BlsI GCNGC 6 cut(s) 475, 576, 579, 873, 999, 1058
Bme1390I CCNGG 2 cut(s) 131, 283
BmgBI CACGTC 1 cut(s) 690
BmiI GGNNCC 2 cut(s) 195, 992
BmrFI CCNGG 2 cut(s) 131, 283
BmsI GCATC 1 cut(s) 1003
BpiI GAAGAC 2 cut(s) 45, 82
BpmI CTGGAG 1 cut(s) 965
Bpu10I CCTNAGC 1 cut(s) 48
BpuMI CCSGG 2 cut(s) 131, 283
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 396, 1060
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 136, 773, 1052
Bse1I ACTGG 2 cut(s) 753, 882
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 396, 1060
BseGI GGATG 3 cut(s) 535, 892, 1018
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 85, 136, 773, 1052
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 753, 882
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 6 cut(s) 485, 586, 589, 883, 984, 1043
BseYI CCCAGC 2 cut(s) 564, 660
BsiSI CCGG 2 cut(s) 130, 283
BslFI GGGAC 2 cut(s) 261, 827
BslI CCNNNNNNNGG 4 cut(s) 85, 136, 773, 1052
BsmAI GTCTC 1 cut(s) 807
BsmFI GGGAC 2 cut(s) 261, 827
Bsp1286I GDGCHC 2 cut(s) 72, 558
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 838
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 195, 992
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 2 cut(s) 753, 882
BssECI CCNNGG 2 cut(s) 396, 1060
BssMI GATC 1 cut(s) 838
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 396, 1060
Bst2BI CACGAG 1 cut(s) 804
Bst4CI ACNGT 4 cut(s) 299, 427, 466, 790
Bst6I CTCTTC 3 cut(s) 497, 625, 962
BstACI GRCGYC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 48, 254, 794
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 3 cut(s) 535, 892, 1018
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 1 cut(s) 841
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 1 cut(s) 838
BstMWI GCNNNNNNNGC 2 cut(s) 380, 647
BstNSI RCATGY 3 cut(s) 480, 645, 1022
BstSCI CCNGG 2 cut(s) 129, 281
BstSFI CTRYAG 2 cut(s) 298, 559
BstSLI GKGCMC 1 cut(s) 72
BstV1I GCAGC 6 cut(s) 485, 586, 589, 883, 984, 1043
BstV2I GAAGAC 2 cut(s) 45, 82
BtrI CACGTC 1 cut(s) 690
BtsCI GGATG 3 cut(s) 535, 892, 1018
BtsIMutI CAGTG 4 cut(s) 40, 243, 462, 795
CaiI CAGNNNCTG 1 cut(s) 877
CfoI GCGC 1 cut(s) 403
CseI GACGC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 241, 428, 949
CviAII CATG 9 cut(s) 319, 331, 477, 637, 642, 832, 836, 842, 1019
CviQI GTAC 3 cut(s) 241, 428, 949
DdeI CTNAG 3 cut(s) 48, 254, 794
DpnI GATC 1 cut(s) 840
DpnII GATC 1 cut(s) 838
DraI TTTAAA 1 cut(s) 1051
Eam1104I CTCTTC 3 cut(s) 497, 625, 962
EarI CTCTTC 3 cut(s) 497, 625, 962
Eco130I CCWWGG 2 cut(s) 396, 1060
Eco24I GRGCYC 1 cut(s) 558
Eco57I CTGAAG 4 cut(s) 16, 40, 333, 405
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 396, 1060
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 2 cut(s) 396, 1060
FaeI CATG 9 cut(s) 322, 334, 480, 640, 645, 835, 839, 845, 1022
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 2 cut(s) 261, 827
FatI CATG 9 cut(s) 318, 330, 476, 636, 641, 831, 835, 841, 1018
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 2 cut(s) 301, 310
Fnu4HI GCNGC 6 cut(s) 474, 575, 578, 872, 998, 1057
FokI GGATG 3 cut(s) 542, 879, 1025
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 6 cut(s) 474, 575, 578, 872, 998, 1057
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 402
GluI GCNGC 6 cut(s) 474, 575, 578, 872, 998, 1057
GsaI CCCAGC 2 cut(s) 568, 664
GsuI CTGGAG 1 cut(s) 965
HaeII RGCGCY 1 cut(s) 404
HapII CCGG 2 cut(s) 130, 283
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 9 cut(s) 322, 334, 480, 640, 645, 835, 839, 845, 1022
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 3 cut(s) 96, 600, 633
HpaII CCGG 2 cut(s) 130, 283
HphI GGTGA 4 cut(s) 334, 422, 716, 872
Hpy166II GTNNAC 5 cut(s) 241, 302, 311, 683, 724
Hpy188I TCNGA 4 cut(s) 95, 203, 938, 1094
Hpy188III TCNNGA 2 cut(s) 896, 944
Hpy8I GTNNAC 5 cut(s) 241, 302, 311, 683, 724
HpyAV CCTTC 6 cut(s) 59, 64, 357, 552, 563, 777
HpyCH4III ACNGT 4 cut(s) 299, 427, 466, 790
HpyCH4IV ACGT 1 cut(s) 689
HpyCH4V TGCA 5 cut(s) 318, 760, 835, 1016, 1040
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 647
HpyF3I CTNAG 3 cut(s) 48, 254, 794
HpySE526I ACGT 1 cut(s) 689
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 9 cut(s) 322, 334, 480, 640, 645, 835, 839, 845, 1022
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 1 cut(s) 838
LmnI GCTCC 1 cut(s) 132
Lsp1109I GCAGC 6 cut(s) 485, 586, 589, 883, 984, 1043
LweI GCATC 1 cut(s) 1003
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 4 cut(s) 181, 257, 742, 860
MalI GATC 1 cut(s) 840
MboI GATC 1 cut(s) 838
MboII GAAGA 8 cut(s) 17, 50, 82, 514, 523, 642, 925, 979
MhlI GDGCHC 2 cut(s) 72, 558
MluCI AATT 3 cut(s) 221, 342, 1023
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 318, 577
MnlI CCTC 4 cut(s) 442, 477, 511, 803
Mph1103I ATGCAT 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 3 cut(s) 227, 405, 1050
MslI CAYNNNNRTG 4 cut(s) 33, 688, 840, 1085
MspA1I CMGCKG 2 cut(s) 166, 997
MspI CCGG 2 cut(s) 130, 283
MspR9I CCNGG 2 cut(s) 131, 283
MwoI GCNNNNNNNGC 2 cut(s) 380, 647
NciI CCSGG 2 cut(s) 131, 283
NdeII GATC 1 cut(s) 838
NlaIII CATG 9 cut(s) 322, 334, 480, 640, 645, 835, 839, 845, 1022
NlaIV GGNNCC 2 cut(s) 195, 992
NmuCI GTSAC 3 cut(s) 181, 742, 860
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 3 cut(s) 480, 645, 1022
OliI CACNNNNGTG 2 cut(s) 33, 688
PciI ACATGT 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 2 cut(s) 96, 600
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 6 cut(s) 475, 576, 579, 873, 999, 1058
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PscI ACATGT 1 cut(s) 1018
PsiI TTATAA 1 cut(s) 587
PspFI CCCAGC 2 cut(s) 564, 660
PspN4I GGNNCC 2 cut(s) 195, 992
PstNI CAGNNNCTG 1 cut(s) 877
PvuII CAGCTG 2 cut(s) 166, 997
RsaI GTAC 3 cut(s) 242, 429, 950
RsaNI GTAC 3 cut(s) 241, 428, 949
RseI CAYNNNNRTG 4 cut(s) 33, 688, 840, 1085
SaqAI TTAA 3 cut(s) 227, 405, 1050
SatI GCNGC 6 cut(s) 474, 575, 578, 872, 998, 1057
Sau3AI GATC 1 cut(s) 838
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 2 cut(s) 131, 283
SduI GDGCHC 2 cut(s) 72, 558
SfaNI GCATC 1 cut(s) 1003
SfcI CTRYAG 2 cut(s) 298, 559
SmiMI CAYNNNNRTG 4 cut(s) 33, 688, 840, 1085
Sse9I AATT 3 cut(s) 221, 342, 1023
SspI AATATT 2 cut(s) 591, 825
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 129, 281
StyI CCWWGG 2 cut(s) 396, 1060
TaaI ACNGT 4 cut(s) 299, 427, 466, 790
TaiI ACGT 1 cut(s) 692
TasI AATT 3 cut(s) 221, 342, 1023
TatI WGTACW 2 cut(s) 240, 948
TfiI GAWTC 2 cut(s) 96, 600
Tru1I TTAA 3 cut(s) 227, 405, 1050
Tru9I TTAA 3 cut(s) 227, 405, 1050
TscAI CASTG 4 cut(s) 40, 243, 469, 795
TseFI GTSAC 3 cut(s) 181, 742, 860
TseI GCWGC 6 cut(s) 473, 574, 577, 871, 997, 1056
Tsp45I GTSAC 3 cut(s) 181, 742, 860
TspDTI ATGAA 2 cut(s) 450, 546
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 4 cut(s) 40, 243, 469, 795
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 221, 342
XceI RCATGY 3 cut(s) 480, 645, 1022
XmiI GTMKAC 2 cut(s) 301, 310
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.