RLG00000018303

positive regulation of histone deubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016243
Physical Location & Seq
Reverse (-)
28117950 .. 28119491
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018303

Sequence Viewer

Length: 1131 bp
ATGGTGAATGTCATAGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGTGCTGAAAGATGACAATTCCTTTAGCGGCAAAGGTACCACAATAGTAGCTCTTATTGGACGTGATGCAATCTACATTGGCTCAGACAGTCTTGTTTTTTCGGGGCACCAGGATCACCTCGATCATATATTAGAAGGAGATCACCAGAAAATCTATGAACTCAATGAGTGTGTTGTGGCAGCAGCGGCTGGTAATGCTGCTATATGTCAGGATTTGTTATGGACGGTACAAAATGAAGTGGAGATTGAGGATAATATATACACTGTGAAAGCAGCACGTGAGAAGTATATTGATGAGTGGAAGAGAAAGAAGAAAGAGGAAGATAAGGATGAACATTTCCCTTCAACTATTGGGATCTATAGCTGGGAAGGGCAGCAGGCTGTAATAATATTTGTTGGATTCCGCAACCAAATGGCAACAGAGTTGGGAAGAGTCATGGCATGTGGGGCTGGTAGTAGCTGGGCTGAAAACTATCTTGGTTCACAGACGTGGAGAGATGATTTTACCAAGTTTGATTTTGTTCACCTTGTCAGGCAATCAGTCACACTTTCCAGTTTGCATAGTCCTTCTACAGGTGGTAGGATTACAGTGCTAAGATTGTCTCGTGGAGGGGACAGGGAAGTATTTCCCATGCATGATCATGTAATCAAATGCTTGGGTGAGTATCAGCAGCAACTGGAAACTTTCTGCCATCCCAAAGTTAGTGGTTTGAAGAATATGCTTTTATTGGTAATCAGAAATCTGGAGTACAACATTGAGAATGAGAAGAGAGTTAGATTTGAAGTCTGGAACCAGCTGCGAGATGTCAGGGATGCACATGTAATTGGAGTTGCTAATGCAAATCCATTTAAAGGCTGCCTTGGAGATTTTGGCAACGGCATAATGATGGTCTGGATTCTTGACTTCATTGATATGGTAGCAGCTCACAGGGCATTTAGGAGTCGTATTGTAGTACCCAATGCCAAAGCATGCTTGATTGTACCCAGCAAGAAGATGGTTACTAGAAGGGTTAGCAAATATTTTGCATCAAATAAGACTGTTCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019899 GO:0030628 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031503 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0033036 GO:0033119 GO:0033120 GO:0034613 GO:0034641 GO:0036002 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0045935 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071004 GO:0071010 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903320 GO:1903321 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1

Protein Analysis

377

Amino Acids

42.48

Weight (kDa)

6.33

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 116, 186
AciI CCGC 3 cut(s) 108, 266, 484
AclWI GGATC 2 cut(s) 201, 443
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 2 cut(s) 15, 87
AcvI CACGTG 1 cut(s) 359
AfaI GTAC 5 cut(s) 118, 309, 830, 1035, 1062
AfiI CCNNNNNNNGG 2 cut(s) 653, 932
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 4 cut(s) 23, 426, 793, 863
AjiI CACGTC 2 cut(s) 143, 570
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AleI CACNNNNGTG 1 cut(s) 568
AluBI AGCT 5 cut(s) 131, 444, 540, 877, 1004
AluI AGCT 5 cut(s) 131, 444, 540, 877, 1004
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 2 cut(s) 201, 443
AlwNI CAGNNNCTG 2 cut(s) 269, 757
ApeKI GCWGC 9 cut(s) 260, 263, 278, 353, 454, 751, 877, 936, 1001
ApoI RAATTY 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 705
Asp718I GGTACC 1 cut(s) 116
AsuHPI GGTGA 5 cut(s) 16, 188, 215, 596, 752
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 2 cut(s) 116, 186
BauI CACGAG 1 cut(s) 684
BbrPI CACGTG 1 cut(s) 359
BbvI GCAGC 9 cut(s) 265, 272, 275, 365, 466, 763, 864, 923, 1013
BccI CCATC 4 cut(s) 41, 780, 961, 1069
BceAI ACGGC 1 cut(s) 973
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 718
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 1 cut(s) 1083
BfmI CTRYAG 2 cut(s) 439, 651
Bme1390I CCNGG 1 cut(s) 191
BmgBI CACGTC 2 cut(s) 143, 570
BmiI GGNNCC 3 cut(s) 118, 188, 872
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 3 cut(s) 136, 883, 1115
BpmI CTGGAG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 78, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 932
Bse1I ACTGG 2 cut(s) 633, 762
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 78, 940
BseGI GGATG 3 cut(s) 415, 772, 898
BseLI CCNNNNNNNGG 2 cut(s) 653, 932
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 633, 762
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 9 cut(s) 265, 272, 275, 365, 466, 763, 864, 923, 1013
BseYI CCCAGC 3 cut(s) 444, 540, 1064
BshNI GGYRCC 2 cut(s) 116, 186
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 653, 932
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 5 cut(s) 193, 202, 220, 435, 718
BspACI CCGC 3 cut(s) 108, 266, 484
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 118, 188, 872
BspPI GGATC 2 cut(s) 201, 443
BspT107I GGYRCC 2 cut(s) 116, 186
BsrI ACTGG 2 cut(s) 633, 762
BssECI CCNNGG 2 cut(s) 78, 940
BssMI GATC 5 cut(s) 193, 202, 220, 435, 718
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 78, 940
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 5 cut(s) 170, 307, 346, 670, 1120
Bst6I CTCTTC 3 cut(s) 377, 505, 842
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 459, 1051
BstDEI CTNAG 2 cut(s) 163, 674
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 3 cut(s) 415, 772, 898
BstKTI GATC 5 cut(s) 196, 205, 223, 438, 721
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 5 cut(s) 193, 202, 220, 435, 718
BstMWI GCNNNNNNNGC 5 cut(s) 62, 266, 275, 527, 1010
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 3 cut(s) 525, 902, 1053
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 439, 651
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 9 cut(s) 265, 272, 275, 365, 466, 763, 864, 923, 1013
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BtrI CACGTC 2 cut(s) 143, 570
BtsCI GGATG 3 cut(s) 415, 772, 898
BtsIMutI CAGTG 2 cut(s) 342, 675
Cac8I GCNNGC 2 cut(s) 459, 1051
CaiI CAGNNNCTG 2 cut(s) 269, 757
Csp6I GTAC 5 cut(s) 117, 308, 829, 1034, 1061
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 7 cut(s) 517, 522, 712, 716, 722, 899, 1050
CviQI GTAC 5 cut(s) 117, 308, 829, 1034, 1061
DdeI CTNAG 2 cut(s) 163, 674
DpnI GATC 5 cut(s) 195, 204, 222, 437, 720
DpnII GATC 5 cut(s) 193, 202, 220, 435, 718
DraI TTTAAA 1 cut(s) 931
Eam1104I CTCTTC 3 cut(s) 377, 505, 842
EarI CTCTTC 3 cut(s) 377, 505, 842
Eco130I CCWWGG 2 cut(s) 78, 940
Eco57I CTGAAG 2 cut(s) 15, 87
Eco72I CACGTG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 78, 940
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 2 cut(s) 78, 940
FaeI CATG 7 cut(s) 520, 525, 715, 719, 725, 902, 1053
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 1 cut(s) 707
FatI CATG 7 cut(s) 516, 521, 711, 715, 721, 898, 1049
FbaI TGATCA 1 cut(s) 718
FokI GGATG 3 cut(s) 422, 759, 905
FspBI CTAG 1 cut(s) 1083
GsaI CCCAGC 3 cut(s) 448, 544, 1068
GsuI CTGGAG 1 cut(s) 845
Hin1II CATG 7 cut(s) 520, 525, 715, 719, 725, 902, 1053
HinfI GANTC 4 cut(s) 480, 513, 976, 1021
HphI GGTGA 5 cut(s) 16, 188, 215, 596, 752
Hpy166II GTNNAC 2 cut(s) 563, 604
Hpy188I TCNGA 2 cut(s) 166, 818
Hpy188III TCNNGA 5 cut(s) 290, 824, 868, 973, 980
Hpy8I GTNNAC 2 cut(s) 563, 604
HpyAV CCTTC 6 cut(s) 39, 209, 432, 443, 657, 1080
HpyCH4III ACNGT 5 cut(s) 170, 307, 346, 670, 1120
HpyCH4IV ACGT 3 cut(s) 142, 358, 569
HpyCH4V TGCA 6 cut(s) 149, 640, 715, 896, 920, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 266, 275, 527, 1010
HpyF3I CTNAG 2 cut(s) 163, 674
HpySE526I ACGT 3 cut(s) 142, 358, 569
Hsp92II CATG 7 cut(s) 520, 525, 715, 719, 725, 902, 1053
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 193, 202, 220, 435, 718
Lsp1109I GCAGC 9 cut(s) 265, 272, 275, 365, 466, 763, 864, 923, 1013
LweI GCATC 3 cut(s) 136, 883, 1115
MaeI CTAG 1 cut(s) 1083
MaeII ACGT 3 cut(s) 142, 358, 569
MaeIII GTNAC 2 cut(s) 622, 1078
MalI GATC 5 cut(s) 195, 204, 222, 437, 720
MboI GATC 5 cut(s) 193, 202, 220, 435, 718
MboII GAAGA 7 cut(s) 394, 403, 413, 522, 805, 859, 1084
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 24, 97, 903
MlyI GAGTC 2 cut(s) 522, 1030
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 4 cut(s) 209, 322, 391, 683
Mph1103I ATGCAT 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 1 cut(s) 930
MslI CAYNNNNRTG 4 cut(s) 568, 720, 965, 992
MspA1I CMGCKG 2 cut(s) 266, 877
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 5 cut(s) 62, 266, 275, 527, 1010
NdeII GATC 5 cut(s) 193, 202, 220, 435, 718
NlaIII CATG 7 cut(s) 520, 525, 715, 719, 725, 902, 1053
NlaIV GGNNCC 3 cut(s) 118, 188, 872
NmuCI GTSAC 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 717
NspI RCATGY 3 cut(s) 525, 902, 1053
OliI CACNNNNGTG 1 cut(s) 568
PaeI GCATGC 1 cut(s) 1053
PciI ACATGT 1 cut(s) 898
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 2 cut(s) 480, 976
PleI GAGTC 2 cut(s) 521, 1029
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 2 cut(s) 521, 1029
Ppu21I YACGTR 1 cut(s) 359
PscI ACATGT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 189
PspCI CACGTG 1 cut(s) 359
PspFI CCCAGC 3 cut(s) 444, 540, 1064
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 118, 188, 872
PstNI CAGNNNCTG 2 cut(s) 269, 757
PsuI RGATCY 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 877
RsaI GTAC 5 cut(s) 118, 309, 830, 1035, 1062
RsaNI GTAC 5 cut(s) 117, 308, 829, 1034, 1061
RseI CAYNNNNRTG 4 cut(s) 568, 720, 965, 992
SaqAI TTAA 1 cut(s) 930
Sau3AI GATC 5 cut(s) 193, 202, 220, 435, 718
SchI GAGTC 2 cut(s) 522, 1030
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 3 cut(s) 136, 883, 1115
SfcI CTRYAG 2 cut(s) 439, 651
SmiMI CAYNNNNRTG 4 cut(s) 568, 720, 965, 992
SphI GCATGC 1 cut(s) 1053
Sse9I AATT 3 cut(s) 24, 97, 903
SsiI CCGC 3 cut(s) 108, 266, 484
SspI AATATT 2 cut(s) 471, 1100
SspMI CTAG 1 cut(s) 1083
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 78, 940
TaaI ACNGT 5 cut(s) 170, 307, 346, 670, 1120
TaiI ACGT 3 cut(s) 145, 361, 572
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 24, 97, 903
TatI WGTACW 1 cut(s) 828
TauI GCSGC 2 cut(s) 111, 269
TfiI GAWTC 2 cut(s) 480, 976
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TscAI CASTG 2 cut(s) 349, 675
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 9 cut(s) 260, 263, 278, 353, 454, 751, 877, 936, 1001
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 4 cut(s) 252, 330, 426, 976
TspRI CASTG 2 cut(s) 349, 675
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 1 cut(s) 24
XceI RCATGY 3 cut(s) 525, 902, 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 1 cut(s) 1083
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.