FvH4_1g23440

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005035
Physical Location & Seq
Reverse (-)
15294993 .. 15299416
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23440.t2

Sequence Viewer

Length: 1887 bp
ATGGCATCATCTCATGGTAATACTCACTCTGAGGCTGAAATTAAGGAACAAATAATCACTGAATTCTATGCTAAAAGTTTACAAATTATTCTCGAGTCGAGGACTCCTTACATGTCCTCCAGAAATTATAGTGGGGAACAAGGCTTGTCATCGCCTTCATCTTCCTCTTCGTCCTCCTCGAGTGTGAGGCCCAGGGATAAGTGGTTTAATTTAGCTCTAAGAGAATGCCCTGCTGCGCTGGAGAATCTTGTTATCTGGCGCCAGAGCAATTTTGAACCTATGGTGGTTGATGTGGTTTTGGTCCAGAGACCAGTTGGTAGTGATTCGGTGGAGAGTTCGCCTAAGAGGAACTTGTCATTGAAAGAGCGGTATCCGAATTGTTGGAATTATGAGCAGGAAGATTTTTGGTGTGAGGCAAAGAGTGAAAAGATTATAGAGAGATGGGTACTGCATTATGATACTCGTAGGACTAGAGAAACAAAATCAGGGAGCAGGAGGTCAAGCAATAGTACTTTACAGATGTTGTATAAGAAATCGATATTACTGTTGAGGTCATTGTATGTTACTCTTAGGCTTTTACCTGCTTATAAAATTTATCGCGATCTCAACTCGTCTGGCCAAATTCTTCCATTTACTCTGGCTCACCGGGTGGCCTCTTTTGCTGAGCCCTTCACATGTAGAGAAGATGCAGAAATGCAGCGGTTTGAGTTTACCCCTGTGGATACTGCTTGTGGTAGGCTTTGCCTTTCAGTGTTGTACTGTTCATCGCTTTCAGATGTAAGCTCTGAGCCATCAACTCCTATGTCTCCCCAAGTTATACCAGACTATGTTGGGAGCCCATTGGCAGACCCACTTAAAAGGTTCCCATCCCTTCCTGTGTCAGGATCATTATCACGTGCCACTCCATCATCATCTCCATTCTCTAGGCGTCATAGTTGGAGTTATGACCATGGTGCAGATTCACCACCTTCAATTTCCTTCTCACCTTCGCCAACACATTCAGAACCTCATGCTTCAATTTCCCACCCACGATCTCGCCATTTCCCACCCACAAGCTTACCACGTTATCAGCCTGGAACATCTCTTGATCATAAGAAGGATATAGGTTTTTATGAGTATTATCCTTCACCTGGCTTTTCTCCTGCACTGTCCCCATCAGCCACTCCATCATTGCCAATCTCTATTCCTGGCAATCATGTTTCAAATAATCCGGTACGGTCTGAGAGTGCACCATTCAGTGCCCCTGTGGCTAAACATGCTAGTTCCCCTGCATCATCCCAGAAGCTAAACTTTCCTCCATCTCCCCCCCTTAGGAGTACTAAAACTACGGTTGGGACAGCTGTTGAAAAGTTACTCTCTTTTGGGAAAGGGGAGTCTAGACAATGTTCTGGGCTTAAGATTTCATCAAGCAGCTCGCAGCAGATATCCTTTTCTAGAAGCTCCACTAGGTCTTTTCCTGATGATTTTGATGATTCGGAGTATCCTTGCCCATTTGATTATGATGATGATGTGACAGATCCCGGTAGCAGACCCGAATCCTTTGACCAAAGGCATGAGCCTGGAGGATTATTTCCAATTACGAAATCCCAAGATGCTGCTGTTGGTGCGCTTGTAAGAATGCTAAAAAAAGCCCCACCTCTTCAGCAAGAGGTCTCTGATTCAGTAAGTTTGTCACAGGACTGCAGGCCTGAAATATGGAGCGATATTAAACAAGAGGCCAATCTCTCTTCTGAGAGACCCGCACCAGGTCACCCTGCTCATTCCTCAAGTGTTATATCTTCAGGGCTCGTAACATCAAAAACTACAGCTGATGCCTTAGAAGAGCTCCGGGGTTACAGGGATATGAAAAACTTGTTACTGGCGCAAAGTACTAAGTTTCATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04211 map04136 map04138 map04140 map04211
Pfam Domains
Protein Families
ATG13

Protein Analysis

629

Amino Acids

69.48

Weight (kDa)

7.62

Isoelectric Point (pI)

78.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG13 PF10033 19 - 254 1.5e-42 Autophagy-related protein 13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 1 cut(s) 600
AciI CCGC 3 cut(s) 367, 700, 1740
AclWI GGATC 2 cut(s) 892, 1511
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 3 cut(s) 62, 591, 621
AcuI CTGAAG 2 cut(s) 1625, 1764
AcvI CACGTG 1 cut(s) 896
AcyI GRCGYC 2 cut(s) 259, 928
AdeI CACNNNGTG 1 cut(s) 649
AfaI GTAC 6 cut(s) 447, 511, 758, 1215, 1318, 1870
AfiI CCNNNNNNNGG 4 cut(s) 881, 1130, 1311, 1745
AflII CTTAAG 1 cut(s) 1394
AflIII ACRYGT 2 cut(s) 111, 674
AgsI TTSAA 6 cut(s) 275, 361, 972, 1017, 1203, 1346
AjnI CCWGG 6 cut(s) 191, 1072, 1129, 1186, 1558, 1744
AluBI AGCT 9 cut(s) 215, 783, 1056, 1285, 1340, 1413, 1440, 1808, 1825
AluI AGCT 9 cut(s) 215, 783, 1056, 1285, 1340, 1413, 1440, 1808, 1825
Alw21I GWGCWC 2 cut(s) 1231, 1827
Alw26I GTCTC 4 cut(s) 301, 810, 1657, 1729
Alw44I GTGCAC 1 cut(s) 1227
AlwI GGATC 2 cut(s) 892, 1511
Ama87I CYCGRG 2 cut(s) 92, 178
AoxI GGCC 5 cut(s) 188, 616, 651, 1685, 1716
ApaLI GTGCAC 1 cut(s) 1227
ApeKI GCWGC 5 cut(s) 233, 697, 1410, 1417, 1595
ApoI RAATTY 3 cut(s) 62, 591, 621
AspLEI GCGC 4 cut(s) 238, 261, 1609, 1864
AspS9I GGNCC 2 cut(s) 189, 301
AsuC2I CCSGG 3 cut(s) 647, 1521, 1829
AsuHPI GGTGA 5 cut(s) 635, 954, 975, 1119, 1742
AvaI CYCGRG 2 cut(s) 92, 178
AvaII GGWCC 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 1310
BaeGI GKGCMC 2 cut(s) 1231, 1243
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 4 cut(s) 669, 839, 1788, 1827
BbrPI CACGTG 1 cut(s) 896
Bbv12I GWGCWC 2 cut(s) 1231, 1827
BbvI GCAGC 5 cut(s) 220, 709, 1422, 1429, 1582
BccI CCATC 7 cut(s) 435, 799, 874, 913, 1162, 1174, 1306
BciT130I CCWGG 6 cut(s) 193, 1074, 1131, 1188, 1560, 1746
BciVI GTATCC 3 cut(s) 381, 715, 1491
BclI TGATCA 1 cut(s) 1087
BcnI CCSGG 3 cut(s) 647, 1521, 1829
BcoDI GTCTC 4 cut(s) 301, 810, 1657, 1729
BfaI CTAG 6 cut(s) 471, 924, 1260, 1377, 1434, 1446
BfmI CTRYAG 2 cut(s) 1681, 1803
BfoI RGCGCY 1 cut(s) 262
BfrI CTTAAG 1 cut(s) 1394
BfuAI ACCTGC 1 cut(s) 589
BfuI GTATCC 3 cut(s) 381, 715, 1491
BglI GCCNNNNNGGC 1 cut(s) 1247
BisI GCNGC 5 cut(s) 234, 698, 1411, 1418, 1596
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 5 cut(s) 235, 699, 1412, 1419, 1597
BmcAI AGTACT 3 cut(s) 511, 1318, 1870
Bme1390I CCNGG 9 cut(s) 193, 647, 1074, 1131, 1188, 1521, 1560, 1746, 1829
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 2 cut(s) 92, 178
BmgT120I GGNCC 2 cut(s) 189, 301
BmiI GGNNCC 3 cut(s) 260, 836, 863
BmrFI CCNGG 9 cut(s) 193, 647, 1074, 1131, 1188, 1521, 1560, 1746, 1829
BmsI GCATC 5 cut(s) 14, 676, 1280, 1582, 1801
BpmI CTGGAG 3 cut(s) 103, 260, 1581
Bpu1102I GCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 1750
BpuMI CCSGG 3 cut(s) 647, 1521, 1829
Bsa29I ATCGAT 1 cut(s) 536
BsaAI YACGTR 2 cut(s) 896, 1884
BsaBI GATNNNNATC 1 cut(s) 889
BsaHI GRCGYC 2 cut(s) 259, 928
BsaI GGTCTC 3 cut(s) 301, 1657, 1729
BsaJI CCNNGG 4 cut(s) 191, 192, 949, 1828
BsaWI WCCGGW 1 cut(s) 1210
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 881, 1130, 1311, 1745
Bse1I ACTGG 2 cut(s) 311, 1863
Bse21I CCTNAGG 1 cut(s) 1310
Bse3DI GCAATG 1 cut(s) 1169
Bse8I GATNNNNATC 1 cut(s) 889
BseBI CCWGG 6 cut(s) 193, 1074, 1131, 1188, 1560, 1746
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 4 cut(s) 191, 192, 949, 1828
BseGI GGATG 2 cut(s) 866, 1274
BseJI GATNNNNATC 1 cut(s) 889
BseLI CCNNNNNNNGG 4 cut(s) 881, 1130, 1311, 1745
BseMI GCAATG 1 cut(s) 1169
BseMII CTCAG 5 cut(s) 21, 654, 777, 1212, 1722
BseNI ACTGG 2 cut(s) 311, 1863
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 2 cut(s) 1231, 1243
BseXI GCAGC 5 cut(s) 220, 709, 1422, 1429, 1582
BsgI GTGCAG 2 cut(s) 975, 1128
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 5 cut(s) 190, 618, 653, 1687, 1718
BshNI GGYRCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 1231, 1827
BsiHKCI CYCGRG 2 cut(s) 92, 178
BsiSI CCGG 4 cut(s) 646, 1211, 1521, 1828
BslFI GGGAC 2 cut(s) 1135, 1348
BslI CCNNNNNNNGG 4 cut(s) 881, 1130, 1311, 1745
BsmAI GTCTC 4 cut(s) 301, 810, 1657, 1729
BsmFI GGGAC 2 cut(s) 1135, 1348
BsmI GAATGC 2 cut(s) 230, 1623
BsnI GGCC 5 cut(s) 190, 618, 653, 1687, 1718
Bso31I GGTCTC 3 cut(s) 301, 1657, 1729
BsoBI CYCGRG 2 cut(s) 92, 178
Bsp1286I GDGCHC 6 cut(s) 669, 839, 1231, 1243, 1788, 1827
Bsp143I GATC 5 cut(s) 601, 884, 1031, 1087, 1516
Bsp1720I GCTNAGC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 949
Bsp68I TCGCGA 1 cut(s) 600
BspACI CCGC 3 cut(s) 367, 700, 1740
BspANI GGCC 5 cut(s) 190, 618, 653, 1687, 1718
BspCNI CTCAG 5 cut(s) 22, 655, 778, 1213, 1723
BspDI ATCGAT 1 cut(s) 536
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 260, 836, 863
BspMAI CTGCAG 1 cut(s) 1685
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 2 cut(s) 892, 1511
BspQI GCTCTTC 1 cut(s) 1815
BspT107I GGYRCC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 1394
BspTNI GGTCTC 3 cut(s) 301, 1657, 1729
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 1169
BsrI ACTGG 2 cut(s) 311, 1863
BssECI CCNNGG 4 cut(s) 191, 192, 949, 1828
BssMI GATC 5 cut(s) 601, 884, 1031, 1087, 1516
BssNI GRCGYC 2 cut(s) 259, 928
BssT1I CCWWGG 1 cut(s) 949
Bst2UI CCWGG 6 cut(s) 193, 1074, 1131, 1188, 1560, 1746
Bst4CI ACNGT 5 cut(s) 546, 761, 1149, 1218, 1330
Bst6I CTCTTC 4 cut(s) 172, 1644, 1732, 1815
BstACI GRCGYC 2 cut(s) 259, 928
BstAFI CTTAAG 1 cut(s) 1394
BstBAI YACGTR 2 cut(s) 896, 1884
BstC8I GCNNGC 2 cut(s) 1415, 1685
BstDSI CCRYGG 1 cut(s) 949
BstEII GGTNACC 1 cut(s) 1748
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 2 cut(s) 866, 1274
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 4 cut(s) 238, 261, 1609, 1864
BstKTI GATC 5 cut(s) 604, 887, 1034, 1090, 1519
BstMAI GTCTC 4 cut(s) 301, 810, 1657, 1729
BstMBI GATC 5 cut(s) 601, 884, 1031, 1087, 1516
BstMWI GCNNNNNNNGC 4 cut(s) 659, 1247, 1256, 1604
BstNI CCWGG 6 cut(s) 193, 1074, 1131, 1188, 1560, 1746
BstNSI RCATGY 3 cut(s) 115, 678, 1259
BstPI GGTNACC 1 cut(s) 1748
BstSCI CCNGG 9 cut(s) 191, 645, 1072, 1129, 1186, 1519, 1558, 1744, 1827
BstSFI CTRYAG 2 cut(s) 1681, 1803
BstSLI GKGCMC 2 cut(s) 1231, 1243
BstSNI TACGTA 1 cut(s) 1884
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 5 cut(s) 220, 709, 1422, 1429, 1582
BstX2I RGATCY 1 cut(s) 1516
BstYI RGATCY 1 cut(s) 1516
Bsu15I ATCGAT 1 cut(s) 536
Bsu36I CCTNAGG 1 cut(s) 1310
BsuI GTATCC 3 cut(s) 381, 715, 1491
BsuRI GGCC 5 cut(s) 190, 618, 653, 1687, 1718
BsuTUI ATCGAT 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 949
BtgZI GCGATG 2 cut(s) 135, 750
BtsCI GGATG 2 cut(s) 866, 1274
BtsIMutI CAGTG 4 cut(s) 57, 756, 1145, 1243
BtuMI TCGCGA 1 cut(s) 600
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 1415, 1685
CfoI GCGC 4 cut(s) 238, 261, 1609, 1864
Cfr13I GGNCC 2 cut(s) 189, 301
ClaI ATCGAT 1 cut(s) 536
CseI GACGC 1 cut(s) 917
CsiI ACCWGGT 1 cut(s) 1744
Csp6I GTAC 6 cut(s) 446, 510, 757, 1214, 1317, 1869
CviAII CATG 8 cut(s) 14, 112, 675, 950, 1010, 1196, 1256, 1553
CviQI GTAC 6 cut(s) 446, 510, 757, 1214, 1317, 1869
DinI GGCGCC 1 cut(s) 260
DpnI GATC 5 cut(s) 603, 886, 1033, 1089, 1518
DpnII GATC 5 cut(s) 601, 884, 1031, 1087, 1516
DraIII CACNNNGTG 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 4 cut(s) 172, 1644, 1732, 1815
EarI CTCTTC 4 cut(s) 172, 1644, 1732, 1815
Ecl136II GAGCTC 1 cut(s) 1825
Eco105I TACGTA 1 cut(s) 1884
Eco130I CCWWGG 1 cut(s) 949
Eco147I AGGCCT 1 cut(s) 1687
Eco24I GRGCYC 4 cut(s) 669, 839, 1788, 1827
Eco31I GGTCTC 3 cut(s) 301, 1657, 1729
Eco32I GATATC 1 cut(s) 1425
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 1825
Eco57I CTGAAG 2 cut(s) 1625, 1764
Eco72I CACGTG 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 1310
Eco88I CYCGRG 2 cut(s) 92, 178
Eco91I GGTNACC 1 cut(s) 1748
EcoICRI GAGCTC 1 cut(s) 1825
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO65I GGTNACC 1 cut(s) 1748
EcoRI GAATTC 1 cut(s) 62
EcoRII CCWGG 6 cut(s) 191, 1072, 1129, 1186, 1558, 1744
EcoRV GATATC 1 cut(s) 1425
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 4 cut(s) 669, 839, 1788, 1827
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 8 cut(s) 17, 115, 678, 953, 1013, 1199, 1259, 1556
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 1274, 1306
FaqI GGGAC 2 cut(s) 1135, 1348
FatI CATG 8 cut(s) 13, 111, 674, 949, 1009, 1195, 1255, 1552
FauI CCCGC 1 cut(s) 1747
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 5 cut(s) 234, 698, 1411, 1418, 1596
FokI GGATG 2 cut(s) 853, 1261
FriOI GRGCYC 4 cut(s) 669, 839, 1788, 1827
Fsp4HI GCNGC 5 cut(s) 234, 698, 1411, 1418, 1596
FspBI CTAG 6 cut(s) 471, 924, 1260, 1377, 1434, 1446
GlaI GCGC 4 cut(s) 237, 260, 1608, 1863
GluI GCNGC 5 cut(s) 234, 698, 1411, 1418, 1596
GsuI CTGGAG 3 cut(s) 103, 260, 1581
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 5 cut(s) 190, 618, 653, 1687, 1718
HapII CCGG 4 cut(s) 646, 1211, 1521, 1828
HgaI GACGC 1 cut(s) 917
HhaI GCGC 4 cut(s) 238, 261, 1609, 1864
Hin1I GRCGYC 2 cut(s) 259, 928
Hin1II CATG 8 cut(s) 17, 115, 678, 953, 1013, 1199, 1259, 1556
Hin6I GCGC 4 cut(s) 236, 259, 1607, 1862
HinP1I GCGC 4 cut(s) 236, 259, 1607, 1862
HindIII AAGCTT 1 cut(s) 1054
HinfI GANTC 9 cut(s) 95, 103, 244, 323, 959, 1373, 1472, 1535, 1658
HpaII CCGG 4 cut(s) 646, 1211, 1521, 1828
HphI GGTGA 5 cut(s) 635, 954, 975, 1119, 1742
Hpy166II GTNNAC 3 cut(s) 80, 711, 1229
Hpy188I TCNGA 9 cut(s) 31, 375, 775, 787, 1003, 1222, 1477, 1657, 1732
Hpy188III TCNNGA 9 cut(s) 92, 120, 304, 599, 882, 1085, 1377, 1434, 1457
Hpy8I GTNNAC 3 cut(s) 80, 711, 1229
HpyAV CCTTC 8 cut(s) 165, 679, 881, 978, 988, 996, 1090, 1134
HpyCH4III ACNGT 5 cut(s) 546, 761, 1149, 1218, 1330
HpyCH4IV ACGT 3 cut(s) 895, 1063, 1883
HpyCH4V TGCA 8 cut(s) 451, 689, 697, 956, 1145, 1229, 1271, 1683
HpyF10VI GCNNNNNNNGC 4 cut(s) 659, 1247, 1256, 1604
HpySE526I ACGT 3 cut(s) 895, 1063, 1883
Hsp92I GRCGYC 2 cut(s) 259, 928
Hsp92II CATG 8 cut(s) 17, 115, 678, 953, 1013, 1199, 1259, 1556
HspAI GCGC 4 cut(s) 236, 259, 1607, 1862
KasI GGCGCC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 5 cut(s) 601, 884, 1031, 1087, 1516
LguI GCTCTTC 1 cut(s) 1815
LmnI GCTCC 5 cut(s) 489, 834, 1445, 1698, 1830
Lsp1109I GCAGC 5 cut(s) 220, 709, 1422, 1429, 1582
LweI GCATC 5 cut(s) 14, 676, 1280, 1582, 1801
MabI ACCWGGT 1 cut(s) 1744
MaeI CTAG 6 cut(s) 471, 924, 1260, 1377, 1434, 1446
MaeII ACGT 3 cut(s) 895, 1063, 1883
MaeIII GTNAC 8 cut(s) 562, 1350, 1510, 1671, 1748, 1789, 1832, 1854
MalI GATC 5 cut(s) 603, 886, 1033, 1089, 1518
MbiI CCGCTC 1 cut(s) 367
MboI GATC 5 cut(s) 601, 884, 1031, 1087, 1516
MboII GAAGA 9 cut(s) 153, 159, 410, 617, 695, 1631, 1719, 1770, 1832
MflI RGATCY 1 cut(s) 1516
MhlI GDGCHC 6 cut(s) 669, 839, 1231, 1243, 1788, 1827
MlsI TGGCCA 1 cut(s) 618
MluNI TGGCCA 1 cut(s) 618
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 3 cut(s) 97, 104, 1382
MmeI TCCRAC 2 cut(s) 362, 917
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 5 cut(s) 42, 207, 855, 1395, 1707
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 3 cut(s) 700, 1340, 1808
MspCI CTTAAG 1 cut(s) 1394
MspI CCGG 4 cut(s) 646, 1211, 1521, 1828
MspR9I CCNGG 9 cut(s) 193, 647, 1074, 1131, 1188, 1521, 1560, 1746, 1829
Mva1269I GAATGC 2 cut(s) 230, 1623
MvaI CCWGG 6 cut(s) 193, 1074, 1131, 1188, 1560, 1746
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 659, 1247, 1256, 1604
NarI GGCGCC 1 cut(s) 259
NciI CCSGG 3 cut(s) 647, 1521, 1829
NcoI CCATGG 1 cut(s) 949
NdeII GATC 5 cut(s) 601, 884, 1031, 1087, 1516
NlaIII CATG 8 cut(s) 17, 115, 678, 953, 1013, 1199, 1259, 1556
NlaIV GGNNCC 3 cut(s) 260, 836, 863
NmuCI GTSAC 3 cut(s) 1510, 1671, 1748
NruI TCGCGA 1 cut(s) 600
NspI RCATGY 3 cut(s) 115, 678, 1259
PaeR7I CTCGAG 2 cut(s) 92, 178
PasI CCCWGGG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 1687
PciI ACATGT 2 cut(s) 111, 674
PciSI GCTCTTC 1 cut(s) 1815
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PctI GAATGC 2 cut(s) 230, 1623
PfeI GAWTC 6 cut(s) 244, 323, 959, 1472, 1535, 1658
PkrI GCNGC 5 cut(s) 235, 699, 1412, 1419, 1597
PleI GAGTC 3 cut(s) 97, 103, 1381
PluTI GGCGCC 1 cut(s) 262
PmaCI CACGTG 1 cut(s) 896
PmlI CACGTG 1 cut(s) 896
PpsI GAGTC 3 cut(s) 97, 103, 1381
Ppu21I YACGTR 2 cut(s) 896, 1884
PscI ACATGT 2 cut(s) 111, 674
PsiI TTATAA 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 1827
Psp6I CCWGG 6 cut(s) 191, 1072, 1129, 1186, 1558, 1744
PspCI CACGTG 1 cut(s) 896
PspEI GGTNACC 1 cut(s) 1748
PspGI CCWGG 6 cut(s) 191, 1072, 1129, 1186, 1558, 1744
PspN4I GGNNCC 3 cut(s) 260, 836, 863
PspPI GGNCC 2 cut(s) 189, 301
PspXI VCTCGAGB 1 cut(s) 178
PstI CTGCAG 1 cut(s) 1685
PsuI RGATCY 1 cut(s) 1516
PvuII CAGCTG 2 cut(s) 1340, 1808
RruI TCGCGA 1 cut(s) 600
RsaI GTAC 6 cut(s) 447, 511, 758, 1215, 1318, 1870
RsaNI GTAC 6 cut(s) 446, 510, 757, 1214, 1317, 1869
SacI GAGCTC 1 cut(s) 1827
SapI GCTCTTC 1 cut(s) 1815
SaqAI TTAA 5 cut(s) 42, 207, 855, 1395, 1707
SatI GCNGC 5 cut(s) 234, 698, 1411, 1418, 1596
Sau3AI GATC 5 cut(s) 601, 884, 1031, 1087, 1516
Sau96I GGNCC 2 cut(s) 189, 301
ScaI AGTACT 3 cut(s) 511, 1318, 1870
SchI GAGTC 3 cut(s) 97, 104, 1382
ScrFI CCNGG 9 cut(s) 193, 647, 1074, 1131, 1188, 1521, 1560, 1746, 1829
SduI GDGCHC 6 cut(s) 669, 839, 1231, 1243, 1788, 1827
SexAI ACCWGGT 1 cut(s) 1744
SfaNI GCATC 5 cut(s) 14, 676, 1280, 1582, 1801
SfcI CTRYAG 2 cut(s) 1681, 1803
SfoI GGCGCC 1 cut(s) 260
Sfr274I CTCGAG 2 cut(s) 92, 178
SinI GGWCC 1 cut(s) 301
SlaI CTCGAG 2 cut(s) 92, 178
SmlI CTYRAG 4 cut(s) 92, 178, 1394, 1765
SmoI CTYRAG 4 cut(s) 92, 178, 1394, 1765
SnaBI TACGTA 1 cut(s) 1884
SseBI AGGCCT 1 cut(s) 1687
SsiI CCGC 3 cut(s) 367, 700, 1740
SspDI GGCGCC 1 cut(s) 258
SspMI CTAG 6 cut(s) 471, 924, 1260, 1377, 1434, 1446
SstI GAGCTC 1 cut(s) 1827
StuI AGGCCT 1 cut(s) 1687
StyD4I CCNGG 9 cut(s) 191, 645, 1072, 1129, 1186, 1519, 1558, 1744, 1827
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 5 cut(s) 546, 761, 1149, 1218, 1330
TaiI ACGT 3 cut(s) 898, 1066, 1886
TaqI TCGA 4 cut(s) 93, 98, 179, 536
TatI WGTACW 4 cut(s) 509, 756, 1316, 1868
TfiI GAWTC 6 cut(s) 244, 323, 959, 1472, 1535, 1658
Tru1I TTAA 5 cut(s) 42, 207, 855, 1395, 1707
Tru9I TTAA 5 cut(s) 42, 207, 855, 1395, 1707
TscAI CASTG 4 cut(s) 64, 756, 1152, 1243
TseFI GTSAC 3 cut(s) 1510, 1671, 1748
TseI GCWGC 5 cut(s) 233, 697, 1410, 1417, 1595
Tsp45I GTSAC 3 cut(s) 1510, 1671, 1748
TspDTI ATGAA 5 cut(s) 147, 753, 1392, 1859, 1868
TspRI CASTG 4 cut(s) 64, 756, 1152, 1243
Vha464I CTTAAG 1 cut(s) 1394
VneI GTGCAC 1 cut(s) 1227
VpaK11BI GGWCC 1 cut(s) 301
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 3 cut(s) 62, 591, 621
XbaI TCTAGA 2 cut(s) 1376, 1433
XceI RCATGY 3 cut(s) 115, 678, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XhoI CTCGAG 2 cut(s) 92, 178
XspI CTAG 6 cut(s) 471, 924, 1260, 1377, 1434, 1446
ZrmI AGTACT 3 cut(s) 511, 1318, 1870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.