Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005035

Physical Location & Seq

Genomic Coordinates Reverse (-)

21084221 .. 21085415

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGAGACGACAACGAGGAGGTGAAGAACAAAGCTCTCCAGATAATCACACAACACAGCCAGAACTTACCTTCTCTCGTCGTCTTCGATCTCGACTACACTCTCTGGCCTTTCTACTGCGAATTTGAAGAAGATGACATGCCATATCTGTACCCACAAGCCTTGCCCATATTGCATGCTCTCAAAGAAAAGGGAGTATCAATGGCCGTGGCCTCAAGATCCCCAACTCCCGATGTAGCCAAATCGTTCCTTCAAACTTTGGGCATCAGCTCCTTCTTTGTGACCCAGGAGATTTTCTCGAGCAGTACTCACAAAACAAAGCATTTTCAGAATATTCATGCAACAACGGGGGTGCCCTTTACCTCAATGCTATTCTTTGATGATGAGGATAGGAATATTCATGCGGTATCGAAAATGGGGGTGACAAGCATTTTAGTTGGTAATGGGGTGAACCTTGGAGCTTTGAGGCAGGGATTGTCTGAGTTTTCAAGAAAGTCAGCTTCATCTAGCAGGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04211 map04136 map04138 map04140 map04211

Pfam Domains

Protein Families

ATG13

Protein Analysis

173

Amino Acids

19.29

Weight (kDa)

5.82

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	23 - 164	9.8e-34	Acid Phosphatase
Hydrolase	PF00702	36 - 135	3.1e-06	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	45 - 146	1.2e-07	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18770
fragaria_vesca	FvH4_1g23440 FvH4_1g23440 FvH4_1g23440 FvH4_1g23440
malus_domestica	MD01G1001900.v1.1
prunus_persica	Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1 Prupe.6G164000_v2.0.a1
pyrus_communis	pycom01g02590
rosa_chinensis	RchiOBHm_Chr2g0118811
rosa_laevigata	RLG00000018422
rosa_multiflora	Rmu_co8044140.1_g000001 Rmu_sc0001814.1_g000017 Rmu_sc0003729.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124700 Rroxscaffold_2G00125170
rosa_rugosa	Rorug02G0218700 Rorug02G0218800 Rorug02G0218900 Rorug02G0219000
rosa_samantha	Rh2AG276000 Rh2BG287700 Rh2DG282900 Rh2DG302000
rosa_wichuraiana	Rw2G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	2 cut(s)	152, 307
AgsI	TTSAA	3 cut(s)	128, 254, 489
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	4 cut(s)	35, 270, 461, 500
AluI	AGCT	4 cut(s)	35, 270, 461, 500
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	3 cut(s)	107, 204, 210
ApoI	RAATTY	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	34, 433, 460
AvaI	CYCGRG	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	507
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	76
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 292, 324
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	207, 285, 454
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	207, 285, 454
BseMII	CTCAG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	357
BshFI	GGCC	3 cut(s)	109, 206, 212
BshNI	GGYRCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	298
BsnI	GGCC	3 cut(s)	109, 206, 212
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	88, 218
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	3 cut(s)	109, 206, 212
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	207, 285, 454
BssMI	GATC	2 cut(s)	88, 218
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	91, 221
BstMBI	GATC	2 cut(s)	88, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	142, 179
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	109, 206, 212
BtgI	CCRYGG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	151, 306
CspCI	CAANNNNNGTGG	4 cut(s)	144, 179, 189, 224
CviAII	CATG	4 cut(s)	139, 176, 338, 401
CviQI	GTAC	2 cut(s)	151, 306
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	2 cut(s)	90, 220
DpnII	GATC	2 cut(s)	88, 218
EaeI	YGGCCR	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	4 cut(s)	142, 179, 341, 404
FaiI	YATR	6 cut(s)	140, 145, 170, 177, 339, 402
FatI	CATG	4 cut(s)	138, 175, 337, 400
FspBI	CTAG	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	109, 206, 212
Hin1II	CATG	4 cut(s)	142, 179, 341, 404
HphI	GGTGA	3 cut(s)	34, 433, 460
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	330, 481
Hpy188III	TCNNGA	6 cut(s)	40, 92, 216, 230, 298, 489
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	81, 260, 283
HpyCH4V	TGCA	2 cut(s)	175, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	142, 179, 341, 404
Kzo9I	GATC	2 cut(s)	88, 218
LmnI	GCTCC	2 cut(s)	275, 458
LpnPI	CCDG	7 cut(s)	53, 74, 91, 272, 299, 455, 496
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	280, 421
MalI	GATC	2 cut(s)	90, 220
MboI	GATC	2 cut(s)	88, 218
MboII	GAAGA	4 cut(s)	37, 76, 140, 143
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	122
MnlI	CCTC	7 cut(s)	10, 13, 223, 373, 379, 459, 507
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	2 cut(s)	88, 218
NlaIII	CATG	4 cut(s)	142, 179, 341, 404
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	280, 421
NspI	RCATGY	2 cut(s)	142, 179
PaeI	GCATGC	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	152, 307
RsaNI	GTAC	2 cut(s)	151, 306
Sau3AI	GATC	2 cut(s)	88, 218
ScaI	AGTACT	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	24, 37, 73, 272, 365, 456, 463, 502
SfaNI	GCATC	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	298
SmlI	CTYRAG	2 cut(s)	214, 298
SmoI	CTYRAG	2 cut(s)	214, 298
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	2 cut(s)	334, 397
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	454
TaqI	TCGA	4 cut(s)	87, 93, 299, 410
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	305
TseFI	GTSAC	2 cut(s)	280, 421
Tsp45I	GTSAC	2 cut(s)	280, 421
TspDTI	ATGAA	3 cut(s)	326, 389, 492
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	2 cut(s)	142, 179
XhoI	CTCGAG	1 cut(s)	298
XspI	CTAG	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.