Rmu_co8044140.1_g000001

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8044140.1
OG0005035
Physical Location & Seq
Forward (+)
90 .. 555
466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8044140.1_g000001.1.cds

Sequence Viewer

Length: 466 bp
atggcatcttctcatggtaataatactcactctgaagcagcaatgaaggaacaaataatcactgaattctatgctaaaagtcttcacataattcttgagtcgaggaccccatatgtgtcctcaagaaattatagtggcgaacaagccttgtcgtcgccatcatcttcctcttcgtcctcctcgagtgtgaggccgagggataagtggtttaatttagctctaagagaatgccctgctgcgctggagaatcttgatctctggcgccagagcaattttgaacctatggtggttgatgtggttttggtccagagacgacttgttagtgacccggtggaatgttcacctagaacggatcttgctaggaacttgtcattgaaagagcggtatccatactgttggaattatgagcaggaagatttttggtgtgaggcaaagagtgaaaagattatagagagatgggtactgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04211 map04136 map04138 map04140 map04211
Pfam Domains
Protein Families
ATG13

Protein Analysis

155

Amino Acids

17.91

Weight (kDa)

5.66

Isoelectric Point (pI)

77.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 382
AciI CCGC 1 cut(s) 382
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 462
AgsI TTSAA 2 cut(s) 278, 376
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 38, 236
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 2 cut(s) 241, 264
AspS9I GGNCC 2 cut(s) 105, 304
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 333
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 2 cut(s) 105, 304
BanI GGYRCC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 50, 223
BccI CCATC 2 cut(s) 166, 450
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 345, 360
BfoI RGCGCY 1 cut(s) 265
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 2 cut(s) 39, 237
BlsI GCNGC 2 cut(s) 40, 238
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 2 cut(s) 105, 304
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 105, 304
BmiI GGNNCC 2 cut(s) 107, 263
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 106, 116
BpuMI CCSGG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 50, 223
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 181
Bsp143I GATC 2 cut(s) 253, 352
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 107, 263
BspPI GGATC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 253, 352
BssNI GRCGYC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 241, 264
BstKTI GATC 2 cut(s) 256, 355
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 253, 352
BstSCI CCNGG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 50, 223
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 60
CfoI GCGC 2 cut(s) 241, 264
Cfr13I GGNCC 2 cut(s) 105, 304
Csp6I GTAC 1 cut(s) 461
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 146, 193, 218
CviKI_1 RGCY 3 cut(s) 146, 193, 218
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 1 cut(s) 221
DinI GGCGCC 1 cut(s) 263
DpnI GATC 2 cut(s) 255, 354
DpnII GATC 2 cut(s) 253, 352
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 105, 304
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 263
EheI GGCGCC 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 17
FatI CATG 1 cut(s) 13
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 39, 237
Fsp4HI GCNGC 2 cut(s) 39, 237
FspBI CTAG 2 cut(s) 345, 360
GlaI GCGC 2 cut(s) 240, 263
GluI GCNGC 2 cut(s) 39, 237
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 329
HhaI GCGC 2 cut(s) 241, 264
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 2 cut(s) 239, 262
HinP1I GCGC 2 cut(s) 239, 262
HinfI GANTC 2 cut(s) 98, 247
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 95, 123, 251, 307
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 2 cut(s) 239, 262
KasI GGCGCC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 253, 352
LpnPI CCDG 7 cut(s) 227, 244, 246, 278, 320, 342, 395
Lsp1109I GCAGC 2 cut(s) 50, 223
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 345, 360
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 255, 354
MbiI CCGCTC 1 cut(s) 382
MboI GATC 2 cut(s) 253, 352
MboII GAAGA 4 cut(s) 74, 156, 162, 425
MflI RGATCY 1 cut(s) 352
MluCI AATT 6 cut(s) 65, 90, 127, 211, 271, 400
Mly113I GGCGCC 1 cut(s) 262
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 8 cut(s) 96, 130, 178, 183, 187, 189, 190, 421
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 262
NciI CCSGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 253, 352
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 107, 263
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 40, 238
PleI GAGTC 1 cut(s) 106
PluTI GGCGCC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 107, 263
PspPI GGNCC 2 cut(s) 105, 304
PspPPI RGGWCCY 1 cut(s) 105
PspXI VCTCGAGB 1 cut(s) 181
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 39, 237
Sau3AI GATC 2 cut(s) 253, 352
Sau96I GGNCC 2 cut(s) 105, 304
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 329
SetI ASST 3 cut(s) 220, 283, 346
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 181
SinI GGWCC 2 cut(s) 105, 304
SlaI CTCGAG 1 cut(s) 181
SmlI CTYRAG 3 cut(s) 95, 121, 181
SmoI CTYRAG 3 cut(s) 95, 121, 181
Sse9I AATT 6 cut(s) 65, 90, 127, 211, 271, 400
SsiI CCGC 1 cut(s) 382
SspDI GGCGCC 1 cut(s) 261
SspMI CTAG 2 cut(s) 345, 360
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 101, 182
TasI AATT 6 cut(s) 65, 90, 127, 211, 271, 400
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 38, 236
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 105, 304
XapI RAATTY 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 181
XspI CTAG 2 cut(s) 345, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.