FvH4_1g24440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013597
Physical Location & Seq
Forward (+)
16288656 .. 16293433
4778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24440.t2

Sequence Viewer

Length: 708 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCAACCCAACCATCAACCCTAAAAGCCCTTCTTCCCATTTCCAGAACCCCATTACTGACCAGGCGCTTGGTCCTCCTGTCTCTCCCTCTAGCCACTTTTCTGCTTCCAAGCAACAGCAGCGCTGCTGATGCAATCGATTCCACTTCTTCTGCTGTCACAAGTTTCAACCCAATCAGTGATACGGAGAGGGATGCTAGTGCTGCCATTTCGAGGAGAATATCTGAAGCATTGGAGTTGTTGGAGAAAGGGAGGGAGTTTCAGGCCACCGGTGACTTTGACAAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGGAGAGCATTGACTTTGTATGAAGTTGGCAACAGAGATGATGCAATTGCAGAGATGGAGGATGTTTCCATATCTTTAAAGGGATATCCAGAAGTGCATGCAGCTCTGGCCGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTAGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATACGTAAAAGACACAAAACATTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTTATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

236

Amino Acids

25.37

Weight (kDa)

5.36

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 543
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 398
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 3 cut(s) 365, 375, 536
AluI AGCT 3 cut(s) 365, 375, 536
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 608
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 3 cut(s) 342, 540, 659
ApeKI GCWGC 5 cut(s) 198, 203, 281, 533, 545
ApoI RAATTY 1 cut(s) 404
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 3 cut(s) 8, 147, 203
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 31, 362, 397
AsuNHI GCTAGC 1 cut(s) 577
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 190, 210, 268, 545, 557
BccI CCATC 2 cut(s) 100, 481
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 4 cut(s) 170, 276, 578, 706
BfoI RGCGCY 2 cut(s) 148, 204
BisI GCNGC 6 cut(s) 199, 204, 282, 534, 543, 546
BlsI GCNGC 6 cut(s) 200, 205, 283, 535, 544, 547
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 199, 262, 463
BmtI GCTAGC 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 680
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 216
BseGI GGATG 2 cut(s) 277, 499
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 680
BseMII CTCAG 2 cut(s) 385, 395
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 3 cut(s) 26, 70, 307
BseXI GCAGC 5 cut(s) 190, 210, 268, 545, 557
BshFI GGCC 3 cut(s) 344, 542, 661
BshTI ACCGGT 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 216
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 3 cut(s) 344, 542, 661
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 1 cut(s) 543
BspANI GGCC 3 cut(s) 344, 542, 661
BspCNI CTCAG 2 cut(s) 384, 394
BspDI ATCGAT 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 581
BspPI GGATC 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 1 cut(s) 347
BssMI GATC 1 cut(s) 613
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 3 cut(s) 49, 372, 612
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 531, 579
BstDEI CTNAG 2 cut(s) 371, 381
BstF5I GGATG 2 cut(s) 277, 499
BstH2I RGCGCY 2 cut(s) 148, 204
BstHHI GCGC 3 cut(s) 8, 147, 203
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 6 cut(s) 14, 198, 209, 281, 539, 542
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 3 cut(s) 12, 533, 569
BstSCI CCNGG 1 cut(s) 140
BstSNI TACGTA 1 cut(s) 640
BstV1I GCAGC 5 cut(s) 190, 210, 268, 545, 557
BstXI CCANNNNNNTGG 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 3 cut(s) 344, 542, 661
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 2 cut(s) 277, 499
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 262, 572
Cac8I GCNNGC 2 cut(s) 531, 579
CfoI GCGC 3 cut(s) 8, 147, 203
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 397
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 3 cut(s) 9, 530, 566
CviJI RGCY 8 cut(s) 107, 173, 344, 365, 375, 536, 542, 661
CviKI_1 RGCY 8 cut(s) 107, 173, 344, 365, 375, 536, 542, 661
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 371, 381
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
DraI TTTAAA 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 49, 372, 612
EarI CTCTTC 3 cut(s) 49, 372, 612
Eco105I TACGTA 1 cut(s) 640
Eco32I GATATC 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 518
FaeI CATG 3 cut(s) 12, 533, 569
FaiI YATR 9 cut(s) 10, 423, 453, 503, 531, 555, 567, 624, 637
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 3 cut(s) 8, 529, 565
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 6 cut(s) 199, 204, 282, 534, 543, 546
FokI GGATG 2 cut(s) 284, 506
Fsp4HI GCNGC 6 cut(s) 199, 204, 282, 534, 543, 546
FspBI CTAG 4 cut(s) 170, 276, 578, 706
GlaI GCGC 3 cut(s) 7, 146, 202
GluI GCNGC 6 cut(s) 199, 204, 282, 534, 543, 546
HaeII RGCGCY 2 cut(s) 148, 204
HaeIII GGCC 3 cut(s) 344, 542, 661
HapII CCGG 1 cut(s) 348
HhaI GCGC 3 cut(s) 8, 147, 203
Hin1II CATG 3 cut(s) 12, 533, 569
Hin6I GCGC 3 cut(s) 6, 145, 201
HinP1I GCGC 3 cut(s) 6, 145, 201
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 31, 362, 397
Hpy166II GTNNAC 2 cut(s) 559, 594
Hpy188I TCNGA 3 cut(s) 304, 418, 666
Hpy188III TCNNGA 3 cut(s) 123, 521, 611
Hpy8I GTNNAC 2 cut(s) 559, 594
HpyAV CCTTC 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 9 cut(s) 212, 410, 425, 476, 482, 529, 533, 602, 685
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 198, 209, 281, 539, 542
HpyF3I CTNAG 2 cut(s) 371, 381
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 3 cut(s) 12, 533, 569
HspAI GCGC 3 cut(s) 6, 145, 201
Kzo9I GATC 1 cut(s) 613
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 5 cut(s) 190, 210, 268, 545, 557
LweI GCATC 3 cut(s) 199, 262, 463
MaeI CTAG 4 cut(s) 170, 276, 578, 706
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 235, 350
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MfeI CAATTG 2 cut(s) 477, 597
MluCI AATT 3 cut(s) 404, 477, 597
MmeI TCCRAC 1 cut(s) 300
MseI TTAA 1 cut(s) 509
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 2 cut(s) 477, 597
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 6 cut(s) 14, 198, 209, 281, 539, 542
NdeII GATC 1 cut(s) 613
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 3 cut(s) 12, 533, 569
NmuCI GTSAC 2 cut(s) 235, 350
NspI RCATGY 3 cut(s) 12, 533, 569
PaeI GCATGC 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 6 cut(s) 200, 205, 283, 535, 544, 547
Ppu21I YACGTR 1 cut(s) 640
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 6 cut(s) 199, 204, 282, 534, 543, 546
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 142
SetI ASST 7 cut(s) 44, 367, 377, 387, 538, 633, 642
SfaNI GCATC 3 cut(s) 199, 262, 463
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 1 cut(s) 151
SnaBI TACGTA 1 cut(s) 640
SphI GCATGC 1 cut(s) 533
Sse9I AATT 3 cut(s) 404, 477, 597
SsiI CCGC 1 cut(s) 543
SspMI CTAG 4 cut(s) 170, 276, 578, 706
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 216, 290
TasI AATT 3 cut(s) 404, 477, 597
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 262, 579
TseFI GTSAC 2 cut(s) 235, 350
TseI GCWGC 5 cut(s) 198, 203, 281, 533, 545
Tsp45I GTSAC 2 cut(s) 235, 350
TspDTI ATGAA 2 cut(s) 468, 669
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 262, 579
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 404
XceI RCATGY 3 cut(s) 12, 533, 569
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 4 cut(s) 170, 276, 578, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.