Rh2CG279900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013597
Physical Location & Seq
Forward (+)
31069503 .. 31075705
6203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG279900.1

Sequence Viewer

Length: 510 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCTTCTTCCTCTTCTTCCTCAACCCAAAAAACCCTAATTCCCATTTCGAGAACCCCATTACTTACGAGGCGGTTGGTCCTCCTGTCTCTCCCTCTAGCTAACTTTCTGCTTCCAAGTAACAGCAGTGCTGTTGATGCAATCGAGTCCACTTCTGCTGTCGTCACAACCTTCAACCCAATCAGTGATGCGGAGAGAGACGCAAGTGCTGCCATTTCCGGGAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGAAGGGACTTTCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGATGCTATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGGTACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

169

Amino Acids

18.13

Weight (kDa)

4.86

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 121, 239, 322, 324
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 374, 502
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 223, 487
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 3 cut(s) 149, 341, 351
AluI AGCT 3 cut(s) 149, 341, 351
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 141, 240
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 127, 319
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 31, 338, 373
AvaII GGWCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 141, 240
BfaI CTAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 268, 498
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 319
BmrFI CCNGG 2 cut(s) 268, 498
BmsI GCATC 3 cut(s) 175, 226, 439
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 285, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 285, 322
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 361, 371
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 141, 240
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 418
BspACI CCGC 4 cut(s) 121, 239, 322, 324
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 360, 370
BspFNI CGCG 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 285, 322
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 498
Bst6I CTCTTC 3 cut(s) 49, 67, 348
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 347, 357
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 8
BstMAI GTCTC 2 cut(s) 141, 240
BstMWI GCNNNNNNNGC 3 cut(s) 14, 185, 257
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 266, 496
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 3 cut(s) 181, 238, 416
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 127, 319
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 373, 501
CviAII CATG 2 cut(s) 9, 478
CviJI RGCY 5 cut(s) 149, 284, 320, 341, 351
CviKI_1 RGCY 5 cut(s) 149, 284, 320, 341, 351
CviQI GTAC 2 cut(s) 373, 501
DdeI CTNAG 2 cut(s) 347, 357
Eam1104I CTCTTC 3 cut(s) 49, 67, 348
EarI CTCTTC 3 cut(s) 49, 67, 348
Eco130I CCWWGG 1 cut(s) 285
Eco32I GATATC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 496
EcoRV GATATC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 2 cut(s) 12, 481
FaiI YATR 5 cut(s) 10, 399, 429, 479, 508
FaqI GGGAC 1 cut(s) 323
FatI CATG 2 cut(s) 8, 477
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 12, 481
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 267
HphI GGTGA 3 cut(s) 31, 338, 373
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 280, 394
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 3 cut(s) 229, 300, 481
HpyCH4V TGCA 5 cut(s) 188, 386, 401, 458, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 185, 257
HpyF3I CTNAG 2 cut(s) 347, 357
Hsp92II CATG 2 cut(s) 12, 481
HspAI GCGC 1 cut(s) 6
KspI CCGCGG 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 5 cut(s) 146, 280, 302, 344, 483
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 3 cut(s) 175, 226, 439
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 167, 211, 326
MboII GAAGA 9 cut(s) 23, 36, 39, 42, 45, 48, 54, 57, 335
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 2 cut(s) 87, 380
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 9 cut(s) 47, 52, 70, 79, 111, 140, 153, 296, 460
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 268, 498
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 14, 185, 257
NciI CCSGG 1 cut(s) 268
NlaIII CATG 2 cut(s) 12, 481
NmuCI GTSAC 2 cut(s) 211, 326
NspI RCATGY 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 2 cut(s) 127, 319
PstNI CAGNNNCTG 1 cut(s) 503
RsaI GTAC 2 cut(s) 374, 502
RsaNI GTAC 2 cut(s) 373, 501
SacII CCGCGG 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 348
SatI GCNGC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 127, 319
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 268, 498
SduI GDGCHC 1 cut(s) 418
SetI ASST 7 cut(s) 44, 151, 221, 343, 353, 363, 502
SfaNI GCATC 3 cut(s) 175, 226, 439
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 1 cut(s) 127
Sse9I AATT 2 cut(s) 87, 380
SsiI CCGC 4 cut(s) 121, 239, 322, 324
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 266, 496
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 2 cut(s) 98, 192
TasI AATT 2 cut(s) 87, 380
TatI WGTACW 1 cut(s) 372
TscAI CASTG 3 cut(s) 181, 238, 423
TseFI GTSAC 2 cut(s) 211, 326
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 2 cut(s) 211, 326
TspDTI ATGAA 1 cut(s) 444
TspRI CASTG 3 cut(s) 181, 238, 423
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 12
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.