Rh2DG315100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013597
Physical Location & Seq
Forward (+)
38919236 .. 38925506
6271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG315100.1

Sequence Viewer

Length: 684 bp
ATGGGGGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAACCCAAAAAACCCTAATTCCCATTTCGAGAACCCCATTACTTACGAGGCGGTTGGTCCTCCTGTCTCTCCCTCTAGCTAACTTTCTGCTTCCAAGTAACAGCAGTGCTGTTGATGCAGTCGAGTCCACTTCTGCTGTCGTCACAGCCTTCAACCCAATCAGTAATGCGGAGAGAGACGCAAGTGCTGCCATTTCCCGGAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGGAGGGACTTCCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGATGCAATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTGGCCGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATATGTAAAAGACACAAAACATTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTTATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

227

Amino Acids

24.73

Weight (kDa)

5.52

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 534
AccII CGCG 1 cut(s) 324
AciI CCGC 5 cut(s) 121, 239, 322, 324, 519
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 223, 487
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 149, 341, 351, 512
AluI AGCT 4 cut(s) 149, 341, 351, 512
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 141, 240
AlwI GGATC 1 cut(s) 584
AoxI GGCC 3 cut(s) 318, 516, 635
ApeKI GCWGC 3 cut(s) 257, 509, 521
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 127, 319
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 31, 338, 373
AvaII GGWCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 244, 521, 533
BccI CCATC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 141, 240
BfaI CTAG 2 cut(s) 146, 682
BisI GCNGC 4 cut(s) 258, 510, 519, 522
BlsI GCNGC 4 cut(s) 259, 511, 520, 523
Bme1390I CCNGG 2 cut(s) 268, 317
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 319
BmrFI CCNGG 2 cut(s) 268, 317
BmsI GCATC 2 cut(s) 175, 439
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 285, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 565
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 285, 322
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 2 cut(s) 361, 371
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 244, 521, 533
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 320, 518, 637
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 141, 240
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 3 cut(s) 320, 518, 637
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 589
BspACI CCGC 5 cut(s) 121, 239, 322, 324, 519
BspANI GGCC 3 cut(s) 320, 518, 637
BspCNI CTCAG 2 cut(s) 360, 370
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 285, 322
BssMI GATC 1 cut(s) 589
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 3 cut(s) 49, 348, 588
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 322, 507, 555
BstDEI CTNAG 2 cut(s) 347, 357
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 1 cut(s) 592
BstMAI GTCTC 2 cut(s) 141, 240
BstMBI GATC 1 cut(s) 589
BstMWI GCNNNNNNNGC 5 cut(s) 14, 185, 257, 515, 518
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 3 cut(s) 12, 509, 545
BstSCI CCNGG 2 cut(s) 266, 315
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 244, 521, 533
BsuRI GGCC 3 cut(s) 320, 518, 637
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 2 cut(s) 181, 548
BtsIMutI CAGTG 3 cut(s) 181, 416, 548
Cac8I GCNNGC 3 cut(s) 322, 507, 555
Cfr13I GGNCC 2 cut(s) 127, 319
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 373
CviAII CATG 4 cut(s) 9, 478, 506, 542
CviJI RGCY 9 cut(s) 149, 218, 284, 320, 341, 351, 512, 518, 637
CviKI_1 RGCY 9 cut(s) 149, 218, 284, 320, 341, 351, 512, 518, 637
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 347, 357
DpnI GATC 1 cut(s) 591
DpnII GATC 1 cut(s) 589
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 49, 348, 588
EarI CTCTTC 3 cut(s) 49, 348, 588
Eco130I CCWWGG 1 cut(s) 285
Eco32I GATATC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 12, 481, 509, 545
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 8, 477, 505, 541
FauI CCCGC 1 cut(s) 329
FauNDI CATATG 1 cut(s) 613
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 258, 510, 519, 522
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 4 cut(s) 258, 510, 519, 522
FspBI CTAG 2 cut(s) 146, 682
GluI GCNGC 4 cut(s) 258, 510, 519, 522
HaeIII GGCC 3 cut(s) 320, 518, 637
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 12, 481, 509, 545
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 268
HphI GGTGA 3 cut(s) 31, 338, 373
Hpy166II GTNNAC 3 cut(s) 198, 535, 570
Hpy188I TCNGA 3 cut(s) 280, 394, 642
Hpy188III TCNNGA 3 cut(s) 99, 497, 587
Hpy8I GTNNAC 3 cut(s) 198, 535, 570
HpyAV CCTTC 2 cut(s) 229, 481
HpyCH4V TGCA 9 cut(s) 188, 386, 401, 452, 458, 505, 509, 578, 661
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 185, 257, 515, 518
HpyF3I CTNAG 2 cut(s) 347, 357
Hsp92II CATG 4 cut(s) 12, 481, 509, 545
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 589
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 8 cut(s) 146, 281, 302, 329, 344, 500, 510, 578
Lsp1109I GCAGC 3 cut(s) 244, 521, 533
LweI GCATC 2 cut(s) 175, 439
MaeI CTAG 2 cut(s) 146, 682
MaeIII GTNAC 3 cut(s) 167, 211, 326
MalI GATC 1 cut(s) 591
MboI GATC 1 cut(s) 589
MfeI CAATTG 2 cut(s) 453, 573
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 87, 380, 453, 573
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 268, 317
MunI CAATTG 2 cut(s) 453, 573
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 5 cut(s) 14, 185, 257, 515, 518
NciI CCSGG 1 cut(s) 268
NdeI CATATG 1 cut(s) 613
NdeII GATC 1 cut(s) 589
NlaIII CATG 4 cut(s) 12, 481, 509, 545
NmuCI GTSAC 2 cut(s) 211, 326
NspI RCATGY 3 cut(s) 12, 509, 545
PaeI GCATGC 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 4 cut(s) 259, 511, 520, 523
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 2 cut(s) 127, 319
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SacII CCGCGG 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 348
SatI GCNGC 4 cut(s) 258, 510, 519, 522
Sau3AI GATC 1 cut(s) 589
Sau96I GGNCC 2 cut(s) 127, 319
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 268, 317
SduI GDGCHC 1 cut(s) 418
SetI ASST 7 cut(s) 44, 151, 343, 353, 363, 514, 609
SfaNI GCATC 2 cut(s) 175, 439
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 1 cut(s) 127
SphI GCATGC 1 cut(s) 509
Sse9I AATT 4 cut(s) 87, 380, 453, 573
SsiI CCGC 5 cut(s) 121, 239, 322, 324, 519
SspMI CTAG 2 cut(s) 146, 682
StyD4I CCNGG 2 cut(s) 266, 315
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 2 cut(s) 98, 192
TasI AATT 4 cut(s) 87, 380, 453, 573
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 521
TscAI CASTG 3 cut(s) 181, 423, 555
TseFI GTSAC 2 cut(s) 211, 326
TseI GCWGC 3 cut(s) 257, 509, 521
Tsp45I GTSAC 2 cut(s) 211, 326
TspDTI ATGAA 2 cut(s) 444, 645
TspRI CASTG 3 cut(s) 181, 423, 555
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 380
XceI RCATGY 3 cut(s) 12, 509, 545
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 2 cut(s) 146, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.