RchiOBHm_Chr2g0121541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013597
Physical Location & Seq
Forward (+)
34449960 .. 34454683
4724 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49405

Sequence Viewer

Length: 678 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCTTCTTCTTCTTCCTCAACCCAAAAAACCCTAATTCCCATTTCGAGAACCCCATTACTTACGAGGCGGTTGGTCCTACTGTCTCTCCCTCTAGCTAACTTTCTGCTTCCAAGTAACAGCAGTGCTGTTGATGCAATCGAGTCCACTTCTGCTGTCACAACCTTCAACCCAATCAGTGATGCGGAGAGAGACGCAAGTGCTGCCATTTCCCGCAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGAAGGGACTTTCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGATGCAATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTGGCCGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATATGTAAAAGACACAAAACACTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTTATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

225

Amino Acids

24.59

Weight (kDa)

5.35

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 318
AciI CCGC 6 cut(s) 118, 233, 262, 316, 318, 513
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 368
AgsI TTSAA 2 cut(s) 217, 481
AluBI AGCT 4 cut(s) 146, 335, 345, 506
AluI AGCT 4 cut(s) 146, 335, 345, 506
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 138, 234
AlwI GGATC 1 cut(s) 578
AoxI GGCC 3 cut(s) 312, 510, 629
ApeKI GCWGC 3 cut(s) 251, 503, 515
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 124, 313
AsuHPI GGTGA 3 cut(s) 31, 332, 367
AvaII GGWCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 238, 515, 527
BccI CCATC 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 138, 234
BfaI CTAG 2 cut(s) 143, 676
BisI GCNGC 4 cut(s) 252, 504, 513, 516
BlsI GCNGC 4 cut(s) 253, 505, 514, 517
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 124, 313
BmsI GCATC 3 cut(s) 172, 220, 433
BsaJI CCNNGG 2 cut(s) 279, 316
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse1I ACTGG 2 cut(s) 559, 632
Bse3DI GCAATG 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 279, 316
BseGI GGATG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 2 cut(s) 355, 365
BseNI ACTGG 2 cut(s) 559, 632
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 238, 515, 527
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 314, 512, 631
BsiHKAI GWGCWC 1 cut(s) 412
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 138, 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 3 cut(s) 314, 512, 631
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 6 cut(s) 118, 233, 262, 316, 318, 513
BspANI GGCC 3 cut(s) 314, 512, 631
BspCNI CTCAG 2 cut(s) 354, 364
BspFNI CGCG 1 cut(s) 318
BspPI GGATC 1 cut(s) 578
BspQI GCTCTTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 2 cut(s) 559, 632
BssECI CCNNGG 2 cut(s) 279, 316
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 3 cut(s) 49, 342, 582
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 316, 501, 549
BstDEI CTNAG 2 cut(s) 341, 351
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 138, 234
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 5 cut(s) 14, 182, 251, 509, 512
BstNSI RCATGY 3 cut(s) 12, 503, 539
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 238, 515, 527
BsuRI GGCC 3 cut(s) 314, 512, 631
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 2 cut(s) 178, 542
BtsIMutI CAGTG 5 cut(s) 178, 232, 410, 542, 625
Cac8I GCNNGC 3 cut(s) 316, 501, 549
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 124, 313
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 367
CviAII CATG 4 cut(s) 9, 472, 500, 536
CviJI RGCY 8 cut(s) 146, 278, 314, 335, 345, 506, 512, 631
CviKI_1 RGCY 8 cut(s) 146, 278, 314, 335, 345, 506, 512, 631
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 341, 351
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 49, 342, 582
EarI CTCTTC 3 cut(s) 49, 342, 582
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 4 cut(s) 12, 475, 503, 539
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 8, 471, 499, 535
FauI CCCGC 2 cut(s) 269, 323
FauNDI CATATG 1 cut(s) 607
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 252, 504, 513, 516
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 252, 504, 513, 516
FspBI CTAG 2 cut(s) 143, 676
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 252, 504, 513, 516
HaeIII GGCC 3 cut(s) 314, 512, 631
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 12, 475, 503, 539
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 191
HphI GGTGA 3 cut(s) 31, 332, 367
Hpy166II GTNNAC 3 cut(s) 195, 529, 564
Hpy188I TCNGA 3 cut(s) 274, 388, 636
Hpy188III TCNNGA 3 cut(s) 96, 491, 581
Hpy8I GTNNAC 3 cut(s) 195, 529, 564
HpyAV CCTTC 3 cut(s) 223, 294, 475
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 9 cut(s) 185, 380, 395, 446, 452, 499, 503, 572, 655
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 182, 251, 509, 512
HpyF3I CTNAG 2 cut(s) 341, 351
Hsp92II CATG 4 cut(s) 12, 475, 503, 539
HspAI GCGC 1 cut(s) 6
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 6 cut(s) 296, 338, 494, 504, 572, 613
Lsp1109I GCAGC 3 cut(s) 238, 515, 527
LweI GCATC 3 cut(s) 172, 220, 433
MaeI CTAG 2 cut(s) 143, 676
MaeIII GTNAC 3 cut(s) 164, 205, 320
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MfeI CAATTG 2 cut(s) 447, 567
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 84, 374, 447, 567
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 318
MunI CAATTG 2 cut(s) 447, 567
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 5 cut(s) 14, 182, 251, 509, 512
NdeI CATATG 1 cut(s) 607
NdeII GATC 1 cut(s) 583
NlaIII CATG 4 cut(s) 12, 475, 503, 539
NmuCI GTSAC 2 cut(s) 205, 320
NspI RCATGY 3 cut(s) 12, 503, 539
PaeI GCATGC 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 342
PkrI GCNGC 4 cut(s) 253, 505, 514, 517
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 124, 313
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 342
SatI GCNGC 4 cut(s) 252, 504, 513, 516
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 2 cut(s) 124, 313
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 412
SetI ASST 8 cut(s) 44, 148, 215, 337, 347, 357, 508, 603
SfaNI GCATC 3 cut(s) 172, 220, 433
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 124
SphI GCATGC 1 cut(s) 503
Sse9I AATT 4 cut(s) 84, 374, 447, 567
SsiI CCGC 6 cut(s) 118, 233, 262, 316, 318, 513
SspMI CTAG 2 cut(s) 143, 676
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 95, 189
TasI AATT 4 cut(s) 84, 374, 447, 567
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 515
TscAI CASTG 5 cut(s) 178, 232, 417, 549, 632
TseFI GTSAC 2 cut(s) 205, 320
TseI GCWGC 3 cut(s) 251, 503, 515
Tsp45I GTSAC 2 cut(s) 205, 320
TspDTI ATGAA 2 cut(s) 438, 639
TspRI CASTG 5 cut(s) 178, 232, 417, 549, 632
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 374
XceI RCATGY 3 cut(s) 12, 503, 539
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 2 cut(s) 143, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.