RchiOBHm_Chr2g0121491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013597
Physical Location & Seq
Forward (+)
34353448 .. 34357804
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49400

Sequence Viewer

Length: 327 bp
ATGCAATCGAGTCCACTTCTGCTGTCGTCACAACCTTCAACCCAATCGGTGGTGCGGAGAGAGACGCAAGTGCTGCTATTTCCCGGAGAATATCTGAAGCTTTGGACTTGTTGGAGAGAGGGAGGGACTTTCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGTTCAACATTGCCAGCCCCACCACCGGTTGCCAGAAGAAGCTGGAGATCGATGACGACCACAAACTGTAATGTCTTTATCGATTTGGGTTTTGCTAAAATGTCTTTCTTGTTCATATCACTTATTTTCACTATTAATTTTAGTTTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

10.42

Isoelectric Point (pI)

69.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 1 cut(s) 140
AciI CCGC 3 cut(s) 55, 138, 140
AcuI CTGAAG 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 49, 199
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 39, 180
AluBI AGCT 4 cut(s) 100, 157, 167, 216
AluI AGCT 4 cut(s) 100, 157, 167, 216
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 73
AseI ATTAAT 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 154
BbvI GCAGC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 323
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 84
Bsa29I ATCGAT 2 cut(s) 224, 255
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 199
Bse118I RCCGGY 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 182
BseCI ATCGAT 2 cut(s) 224, 255
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 49, 199
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 177, 187
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 199
BshVI ATCGAT 2 cut(s) 224, 255
BsiSI CCGG 2 cut(s) 84, 200
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 49, 199
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 3 cut(s) 55, 138, 140
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 176, 186
BspDI ATCGAT 2 cut(s) 224, 255
BspFNI CGCG 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 138, 189
BstDEI CTNAG 2 cut(s) 163, 173
BstDSI CCRYGG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 60
Bsu15I ATCGAT 2 cut(s) 224, 255
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 2 cut(s) 224, 255
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 138, 189
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 135
Cfr42I CCGCGG 1 cut(s) 141
ClaI ATCGAT 2 cut(s) 224, 255
CseI GACGC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 199
CviJI RGCY 6 cut(s) 100, 136, 157, 167, 191, 216
CviKI_1 RGCY 6 cut(s) 100, 136, 157, 167, 191, 216
DdeI CTNAG 2 cut(s) 163, 173
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 1 cut(s) 290
FaqI GGGAC 1 cut(s) 139
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 84, 200
HgaI GACGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 84, 200
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 163, 173
KspI CCGCGG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 221
LguI GCTCTTC 1 cut(s) 164
LpnPI CCDG 6 cut(s) 97, 118, 201, 202, 213, 220
Lsp1109I GCAGC 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 27, 142
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 2 cut(s) 151, 222
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 112, 116
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 84, 200
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 27, 142
PciSI GCTCTTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 82
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 309
PspPI GGNCC 1 cut(s) 135
SacII CCGCGG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 37, 102, 159, 169, 218
SfcI CTRYAG 1 cut(s) 323
Sfr303I CCGCGG 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 141
Sse9I AATT 1 cut(s) 310
SsiI CCGC 3 cut(s) 55, 138, 140
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 3 cut(s) 8, 224, 255
TasI AATT 1 cut(s) 310
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 2 cut(s) 27, 142
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 27, 142
TspDTI ATGAA 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 49
VspI ATTAAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.