Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013597

Physical Location & Seq

Genomic Coordinates Reverse (-)

1678964 .. 1680920

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g01890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGGGCATGTAAAGCACCACCCATTCCCCATCTTCTCCCGACCTCTTCTTCCTCAACTCAACCAGCAAACGTAAAATGGCCATTGCTGAGCAGGCGCTTGGTTCTCTTGTCACTTCCTTTGACTACTTTTCTGCTCCCAAGTAAAGCTAGCTGTAGTGACACCAACAGTACCAATGTAAATTCAACAACTCCTTCTGGTTCGACTTCTTCTGCTCTCACAAGCTTCAACCCGATAAGCGCTGCTGAGAGAGACGCAAGCGATGCAATTTCTCGAAGAATATCGGATGCCTTGGAGTTGTTGGAGAAAGGGAGGGAACTACAGGCTCTGGGTGACTTTGACCAAGCTCTTGTCTGTTTTACTCAGTTTTGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

126

Amino Acids

13.35

Weight (kDa)

7.67

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica	MD01G1005400.v1.1
prunus_persica	Prupe.4G271700_v2.0.a1
pyrus_communis	pycom01g01890
rosa_chinensis	RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata	RLG00000018624
rosa_multiflora	Rmu_sc0000315.1_g000028
rosa_roxburghii	Rroxscaffold_2G00122370
rosa_rugosa	Rorug02G0233600
rosa_samantha	Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana	Rw2G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	186, 229
AluBI	AGCT	4 cut(s)	149, 153, 225, 347
AluI	AGCT	4 cut(s)	149, 153, 225, 347
Alw26I	GTCTC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	328
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	99, 242
AsuHPI	GGTGA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	150, 376
BfmI	CTRYAG	2 cut(s)	154, 320
BfoI	RGCGCY	2 cut(s)	100, 243
BisI	GCNGC	1 cut(s)	243
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	253, 277
BmtI	GCTAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	80, 237, 377
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	82
Bsp1720I	GCTNAGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	81, 238, 376
BspOI	GCTAGC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	95, 151, 259
BstDEI	CTNAG	3 cut(s)	89, 246, 363
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	2 cut(s)	100, 243
BstHHI	GCGC	2 cut(s)	99, 242
BstMAI	GTCTC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 94, 263
BstNSI	RCATGY	1 cut(s)	12
BstSFI	CTRYAG	2 cut(s)	154, 320
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	95, 151, 259
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	2 cut(s)	99, 242
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	6 cut(s)	82, 149, 153, 225, 326, 347
CviKI_1	RGCY	6 cut(s)	82, 149, 153, 225, 326, 347
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	3 cut(s)	89, 246, 363
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	12
FaiI	YATR	1 cut(s)	10
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	150, 376
GlaI	GCGC	2 cut(s)	98, 241
GluI	GCNGC	1 cut(s)	243
HaeII	RGCGCY	2 cut(s)	100, 243
HaeIII	GGCC	1 cut(s)	82
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	99, 242
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	97, 240
HinP1I	GCGC	2 cut(s)	97, 240
HindIII	AAGCTT	1 cut(s)	223
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	40, 273
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	266, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 94, 263
HpyF3I	CTNAG	3 cut(s)	89, 246, 363
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	2 cut(s)	97, 240
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	78, 79, 183, 308, 314
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	253, 277
MaeI	CTAG	2 cut(s)	150, 376
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	111, 158, 332
MboII	GAAGA	5 cut(s)	26, 39, 42, 201, 288
MlsI	TGGCCA	1 cut(s)	82
MluCI	AATT	2 cut(s)	181, 267
MluNI	TGGCCA	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	55, 64, 306
Mox20I	TGGCCA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	82
Msp20I	TGGCCA	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	14, 94, 263
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	12
NmuCI	GTSAC	3 cut(s)	111, 158, 332
NspI	RCATGY	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	243
SetI	ASST	7 cut(s)	47, 75, 151, 155, 227, 349, 377
SfaNI	GCATC	2 cut(s)	253, 277
SfcI	CTRYAG	2 cut(s)	154, 320
Sse9I	AATT	2 cut(s)	181, 267
SspMI	CTAG	2 cut(s)	150, 376
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	203, 274
TasI	AATT	2 cut(s)	181, 267
TseFI	GTSAC	3 cut(s)	111, 158, 332
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	3 cut(s)	111, 158, 332
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	12
XspI	CTAG	2 cut(s)	150, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.