RLG00000018624

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013597
Physical Location & Seq
Forward (+)
32852542 .. 32856535
3994 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018624

Sequence Viewer

Length: 696 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCCTCTTCAACCCAAAAAACCCTGATTCCCATGTCCAGAACCCCATTACTTACCAGGCGGTTGGTCCTCTTGTCTCTCCCTCTAGCTACTTTTCTGCTTCCAAGTAACAGCAGCGCTGTTGATGCAATCGAGTCCACTTCTGCTGTCGTCACAACCTTCAACCCAATCAGTGATGCGGAGAGAGACGCAAGTGCTGCCATTTCCCGGAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGGAGGGACTTCCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGACGCAATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTGGCTGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATACGTAAAATACACAAAACATTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTCATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

232

Amino Acids

25.18

Weight (kDa)

5.52

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 546
AccII CGCG 1 cut(s) 336
AciI CCGC 4 cut(s) 133, 251, 334, 336
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 386
AfeI AGCGCT 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 3 cut(s) 84, 235, 499
AjnI CCWGG 2 cut(s) 128, 327
AluBI AGCT 4 cut(s) 161, 353, 363, 524
AluI AGCT 4 cut(s) 161, 353, 363, 524
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 153, 252
AlwI GGATC 1 cut(s) 596
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 2 cut(s) 330, 647
ApeKI GCWGC 5 cut(s) 186, 269, 521, 530, 533
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 2 cut(s) 8, 191
AspS9I GGNCC 2 cut(s) 139, 331
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 31, 350, 385
AvaII GGWCC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 5 cut(s) 198, 256, 517, 533, 545
BccI CCATC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 130, 329
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 153, 252
BfaI CTAG 2 cut(s) 158, 694
BfmI CTRYAG 1 cut(s) 531
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 5 cut(s) 187, 270, 522, 531, 534
BlsI GCNGC 5 cut(s) 188, 271, 523, 532, 535
Bme1390I CCNGG 3 cut(s) 130, 280, 329
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 139, 331
BmrFI CCNGG 3 cut(s) 130, 280, 329
BmsI GCATC 2 cut(s) 187, 238
BpuMI CCSGG 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 297, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 2 cut(s) 130, 329
BseDI CCNNGG 2 cut(s) 297, 334
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 373, 383
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 2 cut(s) 26, 61
BseXI GCAGC 5 cut(s) 198, 256, 517, 533, 545
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 332, 649
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 2 cut(s) 153, 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 332, 649
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 4 cut(s) 133, 251, 334, 336
BspANI GGCC 2 cut(s) 332, 649
BspCNI CTCAG 2 cut(s) 372, 382
BspFNI CGCG 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 535
BspPI GGATC 1 cut(s) 596
BspQI GCTCTTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 668
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 297, 334
BssMI GATC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 130, 329
Bst6I CTCTTC 5 cut(s) 49, 79, 85, 360, 600
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 334, 519, 567
BstDEI CTNAG 2 cut(s) 359, 369
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 8, 191
BstKTI GATC 1 cut(s) 604
BstMAI GTCTC 2 cut(s) 153, 252
BstMBI GATC 1 cut(s) 601
BstMWI GCNNNNNNNGC 5 cut(s) 14, 197, 269, 527, 530
BstNI CCWGG 2 cut(s) 130, 329
BstNSI RCATGY 3 cut(s) 12, 521, 557
BstSCI CCNGG 3 cut(s) 128, 278, 327
BstSFI CTRYAG 1 cut(s) 531
BstSNI TACGTA 1 cut(s) 628
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 5 cut(s) 198, 256, 517, 533, 545
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 2 cut(s) 332, 649
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 3 cut(s) 250, 428, 560
Cac8I GCNNGC 3 cut(s) 334, 519, 567
CfoI GCGC 2 cut(s) 8, 191
Cfr13I GGNCC 2 cut(s) 139, 331
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 2 cut(s) 269, 470
Csp6I GTAC 1 cut(s) 385
CviAII CATG 5 cut(s) 9, 106, 490, 518, 554
CviJI RGCY 8 cut(s) 161, 296, 332, 353, 363, 524, 530, 649
CviKI_1 RGCY 8 cut(s) 161, 296, 332, 353, 363, 524, 530, 649
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 359, 369
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
Eam1104I CTCTTC 5 cut(s) 49, 79, 85, 360, 600
EarI CTCTTC 5 cut(s) 49, 79, 85, 360, 600
Eco105I TACGTA 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 128, 327
EcoRV GATATC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 5 cut(s) 12, 109, 493, 521, 557
FaqI GGGAC 1 cut(s) 335
FatI CATG 5 cut(s) 8, 105, 489, 517, 553
FauI CCCGC 1 cut(s) 341
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 5 cut(s) 187, 270, 522, 531, 534
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 5 cut(s) 187, 270, 522, 531, 534
FspBI CTAG 2 cut(s) 158, 694
GlaI GCGC 2 cut(s) 7, 190
GluI GCNGC 5 cut(s) 187, 270, 522, 531, 534
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 332, 649
HapII CCGG 1 cut(s) 280
HgaI GACGC 2 cut(s) 269, 470
HhaI GCGC 2 cut(s) 8, 191
Hin1II CATG 5 cut(s) 12, 109, 493, 521, 557
Hin6I GCGC 2 cut(s) 6, 189
HinP1I GCGC 2 cut(s) 6, 189
HinfI GANTC 2 cut(s) 100, 206
HpaII CCGG 1 cut(s) 280
HphI GGTGA 3 cut(s) 31, 350, 385
Hpy166II GTNNAC 3 cut(s) 210, 547, 582
Hpy188I TCNGA 3 cut(s) 292, 406, 654
Hpy188III TCNNGA 3 cut(s) 111, 509, 599
Hpy8I GTNNAC 3 cut(s) 210, 547, 582
HpyAV CCTTC 2 cut(s) 241, 493
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 9 cut(s) 200, 398, 413, 470, 517, 521, 533, 590, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 197, 269, 527, 530
HpyF3I CTNAG 2 cut(s) 359, 369
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 5 cut(s) 12, 109, 493, 521, 557
HspAI GCGC 2 cut(s) 6, 189
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 601
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 5 cut(s) 198, 256, 517, 533, 545
LweI GCATC 2 cut(s) 187, 238
MaeI CTAG 2 cut(s) 158, 694
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 3 cut(s) 179, 223, 338
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MfeI CAATTG 2 cut(s) 465, 585
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 3 cut(s) 392, 465, 585
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 3 cut(s) 130, 280, 329
MunI CAATTG 2 cut(s) 465, 585
MvaI CCWGG 2 cut(s) 130, 329
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 5 cut(s) 14, 197, 269, 527, 530
NciI CCSGG 1 cut(s) 280
NdeII GATC 1 cut(s) 601
NlaIII CATG 5 cut(s) 12, 109, 493, 521, 557
NmuCI GTSAC 2 cut(s) 223, 338
NspI RCATGY 3 cut(s) 12, 521, 557
PaeI GCATGC 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 5 cut(s) 188, 271, 523, 532, 535
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 628
Psp6I CCWGG 2 cut(s) 128, 327
PspGI CCWGG 2 cut(s) 128, 327
PspPI GGNCC 2 cut(s) 139, 331
PstI CTGCAG 1 cut(s) 535
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SacII CCGCGG 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 5 cut(s) 187, 270, 522, 531, 534
Sau3AI GATC 1 cut(s) 601
Sau96I GGNCC 2 cut(s) 139, 331
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 130, 280, 329
SduI GDGCHC 1 cut(s) 430
SetI ASST 9 cut(s) 44, 163, 233, 355, 365, 375, 526, 621, 630
SfaNI GCATC 2 cut(s) 187, 238
SfcI CTRYAG 1 cut(s) 531
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 139
SnaBI TACGTA 1 cut(s) 628
SphI GCATGC 1 cut(s) 521
Sse9I AATT 3 cut(s) 392, 465, 585
SsiI CCGC 4 cut(s) 133, 251, 334, 336
SspMI CTAG 2 cut(s) 158, 694
StyD4I CCNGG 3 cut(s) 128, 278, 327
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 630
TaqI TCGA 1 cut(s) 204
TasI AATT 3 cut(s) 392, 465, 585
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 3 cut(s) 250, 435, 567
TseFI GTSAC 2 cut(s) 223, 338
TseI GCWGC 5 cut(s) 186, 269, 521, 530, 533
Tsp45I GTSAC 2 cut(s) 223, 338
TspDTI ATGAA 3 cut(s) 456, 657, 670
TspRI CASTG 3 cut(s) 250, 435, 567
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 392
XceI RCATGY 3 cut(s) 12, 521, 557
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 2 cut(s) 158, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.