Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013597

Physical Location & Seq

Genomic Coordinates Forward (+)

22288888 .. 22291315

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G271700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGCGCATGTAAAGCACCTATTCCCCATCTTCTCATGACCTGTTCTTCTTCATTAGCTCAACCTCCAAACCTAAAATCCCTAAACCCCTTTTCCAAAACCCCATTACTGAGCAGGCGATTGGTCCTCTTCACTCTCCCTCTAGCTACTTTTCTGCTTCCAAGAAAAGGTAGTTGTGGTGACATCAGCAGCAACAGTATTGATGTAAATTCAACCCCTTCCGGTTCTTCTTCTGCTCTGTCAAACTTCGACCCGATAAGCGCTTCTGAGAGAGACGCAAGTGATGCGATTTCTAGGAGAATATCTGATGCCTTGGAGTTGTTGGAGAAAGGGAGGGAATTGCAGGCTCTCGGTGATTTTAACCAAGCTCTTCTCTGTTTTACTCAGGTGATTGAGAAATACGATGACTTTGCATTTTCAGACTATGCAAGAGTAGGCAGATCATTGATTTTGTACGAGGTGGGCAACAGAGAAGAAGCAATTGCAGAAATGGAGGATGTTTCTATATCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTAGCAGCAGCCTTGTATGCAGACAAACATGCCCCACTCCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACGGACCTCTCATATGTAAAAGAAACAAAACATTGGCCTCCAAGTTTGGTTAGTTCATTGTATCACTTCATCACACTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

237

Amino Acids

25.8

Weight (kDa)

5.35

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica	MD01G1005400.v1.1
prunus_persica	Prupe.4G271700_v2.0.a1
pyrus_communis	pycom01g01890
rosa_chinensis	RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata	RLG00000018624
rosa_multiflora	Rmu_sc0000315.1_g000028
rosa_roxburghii	Rroxscaffold_2G00122370
rosa_rugosa	Rorug02G0233600
rosa_samantha	Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana	Rw2G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	455
AfeI	AGCGCT	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	213, 514
AluBI	AGCT	4 cut(s)	59, 146, 368, 539
AluI	AGCT	4 cut(s)	59, 146, 368, 539
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	611
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	4 cut(s)	189, 536, 545, 548
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	8, 263
AspS9I	GGNCC	2 cut(s)	124, 631
AsuHPI	GGTGA	3 cut(s)	191, 365, 400
AvaII	GGWCC	2 cut(s)	124, 631
BbvI	GCAGC	4 cut(s)	201, 548, 557, 560
BccI	CCATC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	4 cut(s)	143, 294, 542, 709
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	4 cut(s)	190, 537, 546, 549
BlsI	GCNGC	4 cut(s)	191, 538, 547, 550
Bme18I	GGWCC	2 cut(s)	124, 631
BmgT120I	GGNCC	2 cut(s)	124, 631
BmsI	GCATC	2 cut(s)	274, 298
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	3 cut(s)	101, 258, 398
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	201, 548, 557, 560
BshFI	GGCC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	440, 616
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	3 cut(s)	102, 259, 397
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	440, 616
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	3 cut(s)	134, 375, 615
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	116, 345, 534
BstDEI	CTNAG	3 cut(s)	110, 267, 384
BstF5I	GGATG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	8, 263
BstKTI	GATC	2 cut(s)	443, 619
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	440, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 284, 542, 545, 557
BstNSI	RCATGY	3 cut(s)	12, 536, 572
BstV1I	GCAGC	4 cut(s)	201, 548, 557, 560
BsuRI	GGCC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	3 cut(s)	116, 345, 534
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	2 cut(s)	8, 263
Cfr13I	GGNCC	2 cut(s)	124, 631
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	4 cut(s)	9, 37, 533, 569
CviJI	RGCY	7 cut(s)	59, 146, 347, 368, 539, 551, 664
CviKI_1	RGCY	7 cut(s)	59, 146, 347, 368, 539, 551, 664
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	110, 267, 384
DpnI	GATC	2 cut(s)	442, 618
DpnII	GATC	2 cut(s)	440, 616
Eam1104I	CTCTTC	3 cut(s)	134, 375, 615
EarI	CTCTTC	3 cut(s)	134, 375, 615
Eco130I	CCWWGG	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	124, 631
Eco47III	AGCGCT	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	12, 40, 536, 572
FatI	CATG	4 cut(s)	8, 36, 532, 568
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	190, 537, 546, 549
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	4 cut(s)	190, 537, 546, 549
FspBI	CTAG	4 cut(s)	143, 294, 542, 709
GlaI	GCGC	2 cut(s)	7, 262
GluI	GCNGC	4 cut(s)	190, 537, 546, 549
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	8, 263
Hin1II	CATG	4 cut(s)	12, 40, 536, 572
Hin6I	GCGC	2 cut(s)	6, 261
HinP1I	GCGC	2 cut(s)	6, 261
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	191, 365, 400
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	3 cut(s)	268, 307, 421
Hpy188III	TCNNGA	3 cut(s)	37, 524, 614
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	228, 508
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	8 cut(s)	343, 413, 428, 485, 532, 536, 560, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 284, 542, 545, 557
HpyF3I	CTNAG	3 cut(s)	110, 267, 384
Hsp92II	CATG	4 cut(s)	12, 40, 536, 572
HspAI	GCGC	2 cut(s)	6, 261
Kzo9I	GATC	2 cut(s)	440, 616
LguI	GCTCTTC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	55, 100, 235, 329, 371, 537, 605
Lsp1109I	GCAGC	4 cut(s)	201, 548, 557, 560
LweI	GCATC	2 cut(s)	274, 298
MaeI	CTAG	4 cut(s)	143, 294, 542, 709
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	442, 618
MboI	GATC	2 cut(s)	440, 616
MboII	GAAGA	9 cut(s)	23, 39, 42, 121, 219, 222, 362, 485, 602
MfeI	CAATTG	2 cut(s)	480, 600
MluCI	AATT	4 cut(s)	208, 338, 480, 600
MmeI	TCCRAC	1 cut(s)	303
MseI	TTAA	1 cut(s)	360
MspI	CCGG	1 cut(s)	222
MunI	CAATTG	2 cut(s)	480, 600
MwoI	GCNNNNNNNGC	5 cut(s)	14, 284, 542, 545, 557
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	2 cut(s)	440, 616
NlaIII	CATG	4 cut(s)	12, 40, 536, 572
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	3 cut(s)	12, 536, 572
PaeI	GCATGC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	191, 538, 547, 550
PspPI	GGNCC	2 cut(s)	124, 631
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	190, 537, 546, 549
Sau3AI	GATC	2 cut(s)	440, 616
Sau96I	GGNCC	2 cut(s)	124, 631
SfaNI	GCATC	2 cut(s)	274, 298
SinI	GGWCC	2 cut(s)	124, 631
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	4 cut(s)	208, 338, 480, 600
SspMI	CTAG	4 cut(s)	143, 294, 542, 709
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	208, 338, 480, 600
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	189, 536, 545, 548
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	42, 672, 685
TspGWI	ACGGA	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	124, 631
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	3 cut(s)	12, 536, 572
XspI	CTAG	4 cut(s)	143, 294, 542, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.