Rroxscaffold_2G00122370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013597
Physical Location & Seq
Reverse (-)
55443637 .. 55446829
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122370.1

Sequence Viewer

Length: 687 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCAACCCAAAAAACCCTAATTCCCATTTCCAGAACCCCATTACTTACGAGGCGGTTGGTCCTCCTGTCTCTCCCTTTAGCTAACTTTCTGCTTCCAAGTAACAGCAGCGCTGTTGATGCAATCGAGTCCACTTCTGCTGTCGTCACAACCTTCAACCCAATCAGTGATGCGGAGAGAGAAGCAAGTGCTGCCATTTCCCGGAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGAAGGGACTTTCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGATGCAATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTGGCTGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATACGTAAAAGACACAAAACATTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTTATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

228

Amino Acids

24.88

Weight (kDa)

5.36

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013597)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24060 FvH4_1g24440 FvH4_1g24440 FvH4_1g24440
malus_domestica MD01G1005400.v1.1
prunus_persica Prupe.4G271700_v2.0.a1
pyrus_communis pycom01g01890
rosa_chinensis RchiOBHm_Chr2g0121491 RchiOBHm_Chr2g0121541
rosa_laevigata RLG00000018624
rosa_multiflora Rmu_sc0000315.1_g000028
rosa_roxburghii Rroxscaffold_2G00122370
rosa_rugosa Rorug02G0233600
rosa_samantha Rh2AG290400 Rh2BG301200 Rh2CG279900 Rh2DG315100
rosa_wichuraiana Rw2G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 327
AciI CCGC 4 cut(s) 124, 242, 325, 327
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 377
AfeI AGCGCT 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 2 cut(s) 226, 490
AluBI AGCT 4 cut(s) 152, 344, 354, 515
AluI AGCT 4 cut(s) 152, 344, 354, 515
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 587
Aor51HI AGCGCT 1 cut(s) 181
AoxI GGCC 2 cut(s) 321, 638
ApeKI GCWGC 5 cut(s) 177, 260, 512, 521, 524
ApoI RAATTY 1 cut(s) 383
AspLEI GCGC 2 cut(s) 8, 182
AspS9I GGNCC 2 cut(s) 130, 322
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 31, 341, 376
AvaII GGWCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 5 cut(s) 189, 247, 508, 524, 536
BccI CCATC 1 cut(s) 460
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 685
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 5 cut(s) 178, 261, 513, 522, 525
BlsI GCNGC 5 cut(s) 179, 262, 514, 523, 526
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 130, 322
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 178, 229, 442
BpiI GAAGAC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 288, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 288, 325
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 659
BseMII CTCAG 2 cut(s) 364, 374
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 8 cut(s) 26, 43, 46, 49, 52, 55, 58, 61
BseXI GCAGC 5 cut(s) 189, 247, 508, 524, 536
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 323, 640
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 323, 640
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 4 cut(s) 124, 242, 325, 327
BspANI GGCC 2 cut(s) 323, 640
BspCNI CTCAG 2 cut(s) 363, 373
BspFNI CGCG 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 659
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 288, 325
BssMI GATC 1 cut(s) 592
BssT1I CCWWGG 1 cut(s) 288
Bst6I CTCTTC 2 cut(s) 351, 591
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 325, 510, 558
BstDEI CTNAG 2 cut(s) 350, 360
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 8, 182
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 5 cut(s) 14, 188, 260, 518, 521
BstNSI RCATGY 3 cut(s) 12, 512, 548
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 522
BstSNI TACGTA 1 cut(s) 619
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 189, 247, 508, 524, 536
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 323, 640
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 3 cut(s) 241, 419, 551
Cac8I GCNNGC 3 cut(s) 325, 510, 558
CfoI GCGC 2 cut(s) 8, 182
Cfr13I GGNCC 2 cut(s) 130, 322
Cfr42I CCGCGG 1 cut(s) 328
Csp6I GTAC 1 cut(s) 376
CviAII CATG 4 cut(s) 9, 481, 509, 545
CviJI RGCY 8 cut(s) 152, 287, 323, 344, 354, 515, 521, 640
CviKI_1 RGCY 8 cut(s) 152, 287, 323, 344, 354, 515, 521, 640
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 350, 360
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 351, 591
EarI CTCTTC 2 cut(s) 351, 591
Eco105I TACGTA 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 288
Eco32I GATATC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 12, 484, 512, 548
FaiI YATR 9 cut(s) 10, 402, 432, 482, 510, 534, 546, 603, 616
FaqI GGGAC 1 cut(s) 326
FatI CATG 4 cut(s) 8, 480, 508, 544
FauI CCCGC 1 cut(s) 332
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 5 cut(s) 178, 261, 513, 522, 525
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 5 cut(s) 178, 261, 513, 522, 525
FspBI CTAG 1 cut(s) 685
GlaI GCGC 2 cut(s) 7, 181
GluI GCNGC 5 cut(s) 178, 261, 513, 522, 525
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 323, 640
HapII CCGG 1 cut(s) 271
HhaI GCGC 2 cut(s) 8, 182
Hin1II CATG 4 cut(s) 12, 484, 512, 548
Hin6I GCGC 2 cut(s) 6, 180
HinP1I GCGC 2 cut(s) 6, 180
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 271
HphI GGTGA 3 cut(s) 31, 341, 376
Hpy166II GTNNAC 3 cut(s) 201, 538, 573
Hpy188I TCNGA 3 cut(s) 283, 397, 645
Hpy188III TCNNGA 3 cut(s) 102, 500, 590
Hpy8I GTNNAC 3 cut(s) 201, 538, 573
HpyAV CCTTC 3 cut(s) 232, 303, 484
HpyCH4IV ACGT 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 188, 260, 518, 521
HpyF3I CTNAG 2 cut(s) 350, 360
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 4 cut(s) 12, 484, 512, 548
HspAI GCGC 2 cut(s) 6, 180
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 592
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 8 cut(s) 115, 149, 284, 305, 347, 503, 513, 581
Lsp1109I GCAGC 5 cut(s) 189, 247, 508, 524, 536
LweI GCATC 3 cut(s) 178, 229, 442
MaeI CTAG 1 cut(s) 685
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 3 cut(s) 170, 214, 329
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 4 cut(s) 23, 39, 338, 578
MfeI CAATTG 2 cut(s) 456, 576
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 4 cut(s) 90, 383, 456, 576
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 2 cut(s) 456, 576
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 5 cut(s) 14, 188, 260, 518, 521
NciI CCSGG 1 cut(s) 271
NdeII GATC 1 cut(s) 592
NlaIII CATG 4 cut(s) 12, 484, 512, 548
NmuCI GTSAC 2 cut(s) 214, 329
NspI RCATGY 3 cut(s) 12, 512, 548
PaeI GCATGC 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 5 cut(s) 179, 262, 514, 523, 526
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 619
PspPI GGNCC 2 cut(s) 130, 322
PstI CTGCAG 1 cut(s) 526
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SacII CCGCGG 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 351
SatI GCNGC 5 cut(s) 178, 261, 513, 522, 525
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 2 cut(s) 130, 322
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 421
SetI ASST 9 cut(s) 44, 154, 224, 346, 356, 366, 517, 612, 621
SfaNI GCATC 3 cut(s) 178, 229, 442
SfcI CTRYAG 1 cut(s) 522
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 1 cut(s) 130
SnaBI TACGTA 1 cut(s) 619
SphI GCATGC 1 cut(s) 512
Sse9I AATT 4 cut(s) 90, 383, 456, 576
SsiI CCGC 4 cut(s) 124, 242, 325, 327
SspMI CTAG 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 1 cut(s) 621
TaqI TCGA 1 cut(s) 195
TasI AATT 4 cut(s) 90, 383, 456, 576
TatI WGTACW 1 cut(s) 375
TscAI CASTG 3 cut(s) 241, 426, 558
TseFI GTSAC 2 cut(s) 214, 329
TseI GCWGC 5 cut(s) 177, 260, 512, 521, 524
Tsp45I GTSAC 2 cut(s) 214, 329
TspDTI ATGAA 2 cut(s) 447, 648
TspRI CASTG 3 cut(s) 241, 426, 558
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 383
XceI RCATGY 3 cut(s) 12, 512, 548
XmiI GTMKAC 1 cut(s) 537
XspI CTAG 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.