Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007117

Physical Location & Seq

Genomic Coordinates Forward (+)

16472117 .. 16487344

Gene Structure 15228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24660.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3273 bp

ATGAGCAACAACGGCAAATCCCGGAAACGGCCGCCGCCGCCGCAGCAACCCTCGCCGGCGAACCAGCCGCCGCCAAAGCAGCGCCCCGCGACCCAAGAAGAAGATGAATTTCTCGACGAGGACGTCTTCCTCGACGAAACCCTACTCGAGACCGAGGACGACCTCATCCTCCGCGACATCGAGCAACGCCAGTCCCTCGCCTCCCGCATCGCCAAGTGGGCCCGCCCTCCTCTCTCCGACGCCTACAAGTCCGCCGCCAAAAACATCCTGTTTCAGCAATTGGAGATTGACTATGTGATTGGTGAGAGCAATAGAGAATTGCTGCCGAATTGGTCCGGTCCGGCTGCCATTATCAGAATATTTGGGGTTACAAAGGAAGGACATAGTGTGTGCTGCCATGTTCACGGATTCGAGCCCTACTTCTATATCAACTGCCCTCCGGGGATGGGACATGATGATATTCCTCGGTTTCGTCAAGTTCTTGAGGCCAAAATGGGGGAGGCGAACCGGAACAATAAGGCCTCAATGTTCATTCGGCGTGTTGAAATGGTGTACAAGAGGAATATAATGTATTACCAGCAGCAGGATTCTAATCCCTTTCTCAAAATTGTTGTTTCCTTGCCAACAATGGTGGCCCGTTGCCGCGGCATTCTTGATAAAGGCATACAAATTGATGGTGTTGGTGAGAAGAGCTTCATGACATATGAAAGCAATGTTCTCTTTGCTCTTCGGTTCATGATTGATTGCAACATAGTTGGTGGAAACTGGATTGAGCTGCCTGCTGGAAAATATAAGACAGCAAAGAGTTCATCCTACTGCCAGTTAGAGTTCAATTGCCTATATTCAGACTTGATCAGTCATGCTCCTGAAGGCGAATTTTCGAAGATGGCTCCATTTCGCATTCTGAGCTTTGACATTGAATGTGCTGGACGCAAAGGTCATTTTCCTGATGCCAAGCATGATCCTGTCATCCAGGTGGCCAACTTAGTTACTTTGCAGGGGGAGAATCAGCCACTTATTCGTAATGTCATGACTCTCAAGTCATGCTCCCCTATAGCTGGTGCAGATGTGATTTCCTTTAACACAGAAAGAGATGTCTTGCTGGCTTGGAGGGATTTAGTCCGTGGGGCAGACCCAGATCTCATTATTGGATATAACATCTGCAAATTTGATTTGCCATATCTCATTGAGAGAGCTGAGACTTTGGGAATACCTGAATTTCCAATACTTGGGCGCATCAGAAACAGCAGGGTTCGGATCAAAGACACTACTTTTTCTTCAAGGCAGATGGGAACCAGGGAAAGTAAAGAAGTGACAATAGAAGGGAGGGTTCAATTTGATATACTCCAGGTTATGCAACGGGATTACAAGCTAAGCTCATATTCATTAAATTCTGTCTCAGCGCACTTTCTCTCTGAGCAGAAAGAGGATGTCCACCATTCAATAATATCTGATCTTCAGAATGGAAATGCGGAAACTAGGAGGCGACTTGCAGAGTATTGTCTGAAGGATGCATACCTCCCGCAGAGGCTTTTGGACAAACTTATGTTTATTTACAATTATGTTGAGATGGCTCGAGTTACTGGTGTTCCCATCTCATTTCTTCTTTCCAGAGGGCAGAGCATTAAGGTGCTTTCTCAACTTCTTAGGAAAGCAAAACAAAAGAACCTTCTCCTTCCAAATGTCAAACAGGCTGGGTCTGAACAAGGAACATATGAAGGTGCCACTGTTTTGGAAGCAAAGGCAGGATTTTATGAAAAGCCAATTGCAACTTTGGATTTTGCCTCCTTATACCCCTCAATCATGATGGCTTATAATCTATGCTATTGTACCCTGGTCCGATCTGAAGATGTCCGCAAACTCAACCTTCCTCCAGAATGTGTGAACAAAACTCCATCTGGAGAAACATTTGTTAAATCAAACTTGCAAAAGGGAATTCTTCCTGAAATTCTTGAAGAACTAATAGCGGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCGCTTGAGAAGGCAGTGCTAGACGGTCGACAGCTGGCCTTAAAGATAAGTGCGAATTCCGTATATGGGTTTACTGGAGCTACAATTGGTCAGTTACCATGTTTGGAGATATCATCAAGTGTAACGAGCTATGGCCGAGAGATGATTGAGCGCACAAAATACCTTGTAACAGAGGAGTTCACTACGCTTCGAGGCTATGAACATGATGTGGAGGTAATATATGGGGACACAGATTCAGTTATGGTGCAATTTGGTGTAACAACTGTTGAAGAAGCAATGCGCTTGGGAAGAAAAGCTGCTGATATTATCAGTGCCGACTTCACAAAGCCTATCAAACTCGAGTTTGAGAAAGTTTATTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTCTGGACAAATCCAGACAAGTTCGACAAAATGGATACTAAAGGCATTGAAACAGTACGGAGAGATAATTGCTTATTGGTAAAAAACCTGGTAAATGAGTGCTTGCACAAAATACTGATTGACAGAGATATTCCTGGGGCAGTCCAGTATGTCAAGAACACTATATCTGATCTTCTTATGAACCGCATGGATTTGTCACTTTTGGTTATCACTAAGGGTCTCTCAAAAACCGGGGAGGATTATGGAGTAAAGGCAGCTCATGTTGAACTTGCTGAGCGTATGCGGAAGCGAGATGCTGCCACTGCTCCAACCGTTGGGGATCGAGTACCATATGTCATAATCAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAAGTCAGAGGACCCCATCTATGTGCTCGAGAATAACATTCCTATAGACCCTCACTATTATCTTGAAAACCAGATCAGCAAGCCCCTCTTAAGAATTTTTGAGCCTATTTTAAAGAATGCCAGCTCGGAACTTCTCCATGGAAGTCATACAAGATCTATTTCAATGCCTACCCCCTCCAACAGTGGCATTATGAGATTTGCAAAGAAGCAACTGACTTGCCTTGGTTGTAAAACTCCAATTAGCAATTCAGAGAGAACTCTGTGCTCACACTGCAAGGGAAGAGAAGCTGAACTGTACTGCAAAACTGTCACTCATGTTTCTGAGCTGGAGACTCTTTTTGCACGTCTATGGACACAGTGCCAAGAGTGTCAAGGTTCACTTCATCAAGATGTGCTCTGTACAAGTCGGGATTGTCCTATATTTTACAGGAGAAAGAAGGCACAGAAGGACATGAGCGAAGCTAAAGTGCAATTAGACCGGTGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008408 GO:0009058 GO:0009059 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 zf-C4pol

Protein Analysis

1091

Amino Acids

123.52

Weight (kDa)

8.4

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POL3_N	PF24055	136 - 211	1.5e-06	DNA polymerase delta catalytic subunit-like, N-terminal domain
DNA_pol_B_exo1	PF03104	234 - 466	4.6e-68	DNA polymerase family B, exonuclease domain
DNA_pol_B_2	PF03175	472 - 620	6e-06	DNA polymerase type B, organellar and viral
DNA_pol_B	PF00136	530 - 963	3e-162	DNA polymerase family B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63960 AT5G63960
fragaria_vesca	FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660
malus_domestica	MD00G1053300.v1.1 MD05G1053800.v1.1 MD07G1029900.v1.1
prunus_persica	Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1
pyrus_communis	pycom01g00060 pycom07g02190
rosa_chinensis	RchiOBHm_Chr2g0122111
rosa_laevigata	RLG00000018650
rosa_multiflora	Rmu_co8081762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122010
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh2AG293000 Rh2BG303400 Rh2CG281900 Rh2DG317000
rosa_wichuraiana	Rw2G023500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1815
AasI	GACNNNNNNGTC	3 cut(s)	122, 936, 1039
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	1721, 2765
AccB7I	CCANNNNNTGG	2 cut(s)	1229, 2723
AccI	GTMKAC	1 cut(s)	2038
AccII	CGCG	3 cut(s)	89, 174, 645
AclWI	GGATC	5 cut(s)	956, 1265, 2003, 2016, 2736
AcoI	YGGCCR	3 cut(s)	29, 978, 2143
AcsI	RAATTY	9 cut(s)	107, 875, 1166, 1217, 1390, 1935, 1947, 2065, 2874
AcuI	CTGAAG	4 cut(s)	888, 1442, 1526, 1866
AcyI	GRCGYC	2 cut(s)	123, 240
AfaI	GTAC	6 cut(s)	554, 1831, 2466, 2736, 3077, 3181
AfiI	CCNNNNNNNGG	8 cut(s)	27, 446, 495, 583, 1058, 1229, 2076, 2723
AflII	CTTAAG	1 cut(s)	2869
AgeI	ACCGGT	1 cut(s)	3258
AjiI	CACGTC	1 cut(s)	3125
AjnI	CCWGG	6 cut(s)	972, 1295, 1347, 1833, 2496, 2542
AjuI	GAANNNNNNNTTGG	2 cut(s)	3010, 3042
Alw21I	GWGCWC	3 cut(s)	2808, 3047, 3177
Alw26I	GTCTC	5 cut(s)	143, 1193, 1402, 2633, 3104
AlwI	GGATC	5 cut(s)	956, 1265, 2003, 2016, 2736
Ama87I	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
AoxI	GGCC	8 cut(s)	29, 219, 486, 519, 633, 978, 2046, 2143
ApaI	GGGCCC	1 cut(s)	223
ApoI	RAATTY	9 cut(s)	107, 875, 1166, 1217, 1390, 1935, 1947, 2065, 2874
AsiGI	ACCGGT	1 cut(s)	3258
Asp700I	GAANNNNTTC	1 cut(s)	692
AspLEI	GCGC	5 cut(s)	84, 1236, 1405, 2163, 2292
AspS9I	GGNCC	7 cut(s)	219, 220, 333, 338, 634, 1837, 2791
AsuC2I	CCSGG	3 cut(s)	22, 441, 2641
AsuHPI	GGTGA	2 cut(s)	314, 695
AsuII	TTCGAA	1 cut(s)	881
AvaI	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
AvaII	GGWCC	4 cut(s)	333, 338, 1837, 2791
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	980
BamHI	GGATCC	1 cut(s)	2008
BanI	GGYRCC	2 cut(s)	1721, 2765
BanII	GRGCYC	2 cut(s)	223, 417
BarI	GAAGNNNNNNTAC	2 cut(s)	1499, 1531
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	3 cut(s)	2808, 3047, 3177
BccI	CCATC	9 cut(s)	439, 668, 880, 1282, 1564, 1601, 1801, 1903, 2804
BceAI	ACGGC	2 cut(s)	28, 44
BciT130I	CCWGG	6 cut(s)	974, 1297, 1349, 1835, 2498, 2544
BciVI	GTATCC	1 cut(s)	2437
BclI	TGATCA	1 cut(s)	852
BcnI	CCSGG	3 cut(s)	22, 441, 2641
BcoDI	GTCTC	5 cut(s)	143, 1193, 1402, 2633, 3104
BfaI	CTAG	2 cut(s)	1479, 2030
BfmI	CTRYAG	2 cut(s)	1053, 2823
BfoI	RGCGCY	1 cut(s)	85
BfrI	CTTAAG	1 cut(s)	2869
BfuI	GTATCC	1 cut(s)	2437
BglI	GCCNNNNNGGC	1 cut(s)	218
BglII	AGATCT	2 cut(s)	1138, 2933
BlpI	GCTNAGC	2 cut(s)	1373, 2682
Bme1390I	CCNGG	9 cut(s)	22, 441, 974, 1297, 1349, 1835, 2498, 2544, 2641
Bme18I	GGWCC	4 cut(s)	333, 338, 1837, 2791
BmeT110I	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
BmgBI	CACGTC	1 cut(s)	3125
BmgT120I	GGNCC	7 cut(s)	219, 220, 333, 338, 634, 1837, 2791
BmiI	GGNNCC	7 cut(s)	221, 891, 1294, 1723, 2010, 2767, 2793
BmrFI	CCNGG	9 cut(s)	22, 441, 974, 1297, 1349, 1835, 2498, 2544, 2641
BmsI	GCATC	5 cut(s)	216, 940, 1245, 1501, 2692
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	5 cut(s)	1331, 1857, 1920, 2106, 3128
Bpu1102I	GCTNAGC	2 cut(s)	1373, 2682
Bpu14I	TTCGAA	1 cut(s)	881
BpuEI	CTTGAG	3 cut(s)	503, 1022, 2036
BpuMI	CCSGG	3 cut(s)	22, 441, 2641
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	2 cut(s)	123, 240
BsaI	GGTCTC	2 cut(s)	143, 2633
BsaWI	WCCGGW	3 cut(s)	335, 507, 3258
Bsc4I	CCNNNNNNNGG	8 cut(s)	27, 446, 495, 583, 1058, 1229, 2076, 2723
Bse118I	RCCGGY	2 cut(s)	55, 3258
Bse1I	ACTGG	6 cut(s)	190, 770, 820, 1588, 2089, 2554
Bse3DI	GCAATG	2 cut(s)	718, 2292
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	6 cut(s)	974, 1297, 1349, 1835, 2498, 2544
BseGI	GGATG	7 cut(s)	165, 264, 450, 809, 969, 1435, 1516
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	8 cut(s)	27, 446, 495, 583, 1058, 1229, 2076, 2723
BseMI	GCAATG	2 cut(s)	718, 2292
BseMII	CTCAG	6 cut(s)	896, 1188, 1407, 1413, 2673, 3093
BseNI	ACTGG	6 cut(s)	190, 770, 820, 1588, 2089, 2554
BseRI	GAGGAG	2 cut(s)	219, 2198
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	1694
BsgI	GTGCAG	1 cut(s)	1083
Bsh1236I	CGCG	3 cut(s)	89, 174, 645
Bsh1285I	CGRYCG	2 cut(s)	32, 2038
BshFI	GGCC	8 cut(s)	31, 221, 488, 521, 635, 980, 2048, 2145
BshNI	GGYRCC	2 cut(s)	1721, 2765
BshTI	ACCGGT	1 cut(s)	3258
BsiEI	CGRYCG	2 cut(s)	32, 2038
BsiHKAI	GWGCWC	3 cut(s)	2808, 3047, 3177
BsiHKCI	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
BsiSI	CCGG	8 cut(s)	22, 56, 336, 341, 440, 508, 2640, 3259
BslFI	GGGAC	3 cut(s)	178, 462, 2249
BslI	CCNNNNNNNGG	8 cut(s)	27, 446, 495, 583, 1058, 1229, 2076, 2723
BsmAI	GTCTC	5 cut(s)	143, 1193, 1402, 2633, 3104
BsmFI	GGGAC	3 cut(s)	178, 462, 2249
BsmI	GAATGC	3 cut(s)	648, 900, 2902
BsnI	GGCC	8 cut(s)	31, 221, 488, 521, 635, 980, 2048, 2145
Bso31I	GGTCTC	2 cut(s)	143, 2633
BsoBI	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
Bsp119I	TTCGAA	1 cut(s)	881
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	5 cut(s)	223, 417, 2808, 3047, 3177
Bsp1407I	TGTACA	2 cut(s)	552, 3179
Bsp1720I	GCTNAGC	2 cut(s)	1373, 2682
Bsp19I	CCATGG	1 cut(s)	2917
BspANI	GGCC	8 cut(s)	31, 221, 488, 521, 635, 980, 2048, 2145
BspCNI	CTCAG	6 cut(s)	897, 1189, 1408, 1412, 2674, 3094
BspFNI	CGCG	3 cut(s)	89, 174, 645
BspHI	TCATGA	4 cut(s)	696, 735, 1029, 1803
BspLI	GGNNCC	7 cut(s)	221, 891, 1294, 1723, 2010, 2767, 2793
BspPI	GGATC	5 cut(s)	956, 1265, 2003, 2016, 2736
BspQI	GCTCTTC	2 cut(s)	683, 732
BspT104I	TTCGAA	1 cut(s)	881
BspT107I	GGYRCC	2 cut(s)	1721, 2765
BspTI	CTTAAG	1 cut(s)	2869
BspTNI	GGTCTC	2 cut(s)	143, 2633
BsrDI	GCAATG	2 cut(s)	718, 2292
BsrFI	RCCGGY	2 cut(s)	55, 3258
BsrGI	TGTACA	2 cut(s)	552, 3179
BsrI	ACTGG	6 cut(s)	190, 770, 820, 1588, 2089, 2554
BssAI	RCCGGY	2 cut(s)	55, 3258
BssNI	GRCGYC	2 cut(s)	123, 240
BssT1I	CCWWGG	3 cut(s)	2769, 2917, 3001
Bst2UI	CCWGG	6 cut(s)	974, 1297, 1349, 1835, 2498, 2544
Bst4CI	ACNGT	9 cut(s)	1729, 2036, 2275, 2464, 2722, 2963, 3075, 3088, 3138
Bst6I	CTCTTC	4 cut(s)	683, 732, 2387, 3055
BstACI	GRCGYC	2 cut(s)	123, 240
BstAFI	CTTAAG	1 cut(s)	2869
BstAPI	GCANNNNNTGC	1 cut(s)	2765
BstAUI	TGTACA	2 cut(s)	552, 3179
BstBI	TTCGAA	1 cut(s)	881
BstC8I	GCNNGC	8 cut(s)	57, 223, 780, 1104, 2046, 2513, 2861, 2902
BstDSI	CCRYGG	3 cut(s)	643, 1123, 2917
BstF5I	GGATG	7 cut(s)	165, 264, 450, 809, 969, 1435, 1516
BstFNI	CGCG	3 cut(s)	89, 174, 645
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	5 cut(s)	84, 1236, 1405, 2163, 2292
BstMAI	GTCTC	5 cut(s)	143, 1193, 1402, 2633, 3104
BstMCI	CGRYCG	2 cut(s)	32, 2038
BstNI	CCWGG	6 cut(s)	974, 1297, 1349, 1835, 2498, 2544
BstSCI	CCNGG	9 cut(s)	20, 439, 972, 1295, 1347, 1833, 2496, 2542, 2639
BstSFI	CTRYAG	2 cut(s)	1053, 2823
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	3 cut(s)	89, 174, 645
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	3 cut(s)	1138, 2008, 2933
BstXI	CCANNNNNNTGG	1 cut(s)	1732
BstYI	RGATCY	3 cut(s)	1138, 2008, 2933
BstZI	CGGCCG	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	2437
BsuRI	GGCC	8 cut(s)	31, 221, 488, 521, 635, 980, 2048, 2145
BtgI	CCRYGG	3 cut(s)	643, 1123, 2917
BtgZI	GCGATG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	3125
BtsCI	GGATG	7 cut(s)	165, 264, 450, 809, 969, 1435, 1516
BtsI	GCAGTG	3 cut(s)	2031, 2709, 3049
BtsIMutI	CAGTG	7 cut(s)	1725, 2031, 2326, 2709, 2968, 3049, 3143
Cac8I	GCNNGC	8 cut(s)	57, 223, 780, 1104, 2046, 2513, 2861, 2902
CciI	TCATGA	4 cut(s)	696, 735, 1029, 1803
CfoI	GCGC	5 cut(s)	84, 1236, 1405, 2163, 2292
Cfr10I	RCCGGY	2 cut(s)	55, 3258
Cfr13I	GGNCC	7 cut(s)	219, 220, 333, 338, 634, 1837, 2791
Cfr42I	CCGCGG	1 cut(s)	646
CpoI	CGGWCCG	1 cut(s)	338
CseI	GACGC	2 cut(s)	248, 939
CsiI	ACCWGGT	1 cut(s)	2496
Csp6I	GTAC	6 cut(s)	553, 1830, 2465, 2735, 3076, 3180
CspAI	ACCGGT	1 cut(s)	3258
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CspI	CGGWCCG	1 cut(s)	338
CviQI	GTAC	6 cut(s)	553, 1830, 2465, 2735, 3076, 3180
DraI	TTTAAA	1 cut(s)	2892
DrdI	GACNNNNNNGTC	3 cut(s)	122, 936, 1039
DseDI	GACNNNNNNGTC	3 cut(s)	122, 936, 1039
EaeI	YGGCCR	3 cut(s)	29, 978, 2143
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	4 cut(s)	683, 732, 2387, 3055
EarI	CTCTTC	4 cut(s)	683, 732, 2387, 3055
EciI	GGCGGA	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	2769, 2917, 3001
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	223, 417
Eco31I	GGTCTC	2 cut(s)	143, 2633
Eco32I	GATATC	1 cut(s)	2121
Eco47I	GGWCC	4 cut(s)	333, 338, 1837, 2791
Eco52I	CGGCCG	1 cut(s)	29
Eco57I	CTGAAG	4 cut(s)	888, 1442, 1526, 1866
Eco88I	CYCGRG	4 cut(s)	146, 1575, 2348, 2807
EcoO109I	RGGNCCY	1 cut(s)	2791
EcoRI	GAATTC	2 cut(s)	1935, 2065
EcoRII	CCWGG	6 cut(s)	972, 1295, 1347, 1833, 2496, 2542
EcoRV	GATATC	1 cut(s)	2121
EcoT14I	CCWWGG	3 cut(s)	2769, 2917, 3001
EcoT22I	ATGCAT	1 cut(s)	1516
EcoT38I	GRGCYC	2 cut(s)	223, 417
ErhI	CCWWGG	3 cut(s)	2769, 2917, 3001
FalI	AAGNNNNNCTT	4 cut(s)	2852, 2884, 3144, 3176
FaqI	GGGAC	3 cut(s)	178, 462, 2249
FauI	CCCGC	4 cut(s)	94, 212, 230, 1530
FauNDI	CATATG	3 cut(s)	703, 1714, 2740
FbaI	TGATCA	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	2038
FokI	GGATG	7 cut(s)	152, 251, 457, 796, 956, 1442, 1523
FriOI	GRGCYC	2 cut(s)	223, 417
FspBI	CTAG	2 cut(s)	1479, 2030
GlaI	GCGC	5 cut(s)	83, 1235, 1404, 2162, 2291
GsaI	CCCAGC	1 cut(s)	1698
GsuI	CTGGAG	5 cut(s)	1331, 1857, 1920, 2106, 3128
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	8 cut(s)	31, 221, 488, 521, 635, 980, 2048, 2145
HapII	CCGG	8 cut(s)	22, 56, 336, 341, 440, 508, 2640, 3259
HgaI	GACGC	2 cut(s)	248, 939
HhaI	GCGC	5 cut(s)	84, 1236, 1405, 2163, 2292
Hin1I	GRCGYC	2 cut(s)	123, 240
Hin6I	GCGC	5 cut(s)	82, 1234, 1403, 2161, 2290
HinP1I	GCGC	5 cut(s)	82, 1234, 1403, 2161, 2290
HincII	GTYRAC	1 cut(s)	2039
HindII	GTYRAC	1 cut(s)	2039
HinfI	GANTC	6 cut(s)	408, 587, 1006, 1033, 2243, 3112
HpaII	CCGG	8 cut(s)	22, 56, 336, 341, 440, 508, 2640, 3259
HphI	GGTGA	2 cut(s)	314, 695
Hpy166II	GTNNAC	8 cut(s)	403, 553, 1435, 1885, 2039, 2082, 2190, 3158
Hpy8I	GTNNAC	8 cut(s)	403, 553, 1435, 1885, 2039, 2082, 2190, 3158
Hpy99I	CGWCG	3 cut(s)	119, 137, 242
HpyCH4III	ACNGT	9 cut(s)	1729, 2036, 2275, 2464, 2722, 2963, 3075, 3088, 3138
HpyCH4IV	ACGT	2 cut(s)	123, 3124
HpySE526I	ACGT	2 cut(s)	123, 3124
Hsp92I	GRCGYC	2 cut(s)	123, 240
HspAI	GCGC	5 cut(s)	82, 1234, 1403, 2161, 2290
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	646
LguI	GCTCTTC	2 cut(s)	683, 732
LmnI	GCTCC	5 cut(s)	868, 895, 1052, 2087, 2719
LweI	GCATC	5 cut(s)	216, 940, 1245, 1501, 2692
MabI	ACCWGGT	1 cut(s)	2496
MaeI	CTAG	2 cut(s)	1479, 2030
MaeII	ACGT	2 cut(s)	123, 3124
MfeI	CAATTG	4 cut(s)	278, 832, 1764, 2094
MflI	RGATCY	3 cut(s)	1138, 2008, 2933
MhlI	GDGCHC	5 cut(s)	223, 417, 2808, 3047, 3177
MlsI	TGGCCA	1 cut(s)	980
MluNI	TGGCCA	1 cut(s)	980
MlyI	GAGTC	2 cut(s)	1027, 3106
MmeI	TCCRAC	3 cut(s)	261, 2741, 2982
Mox20I	TGGCCA	1 cut(s)	980
Mph1103I	ATGCAT	1 cut(s)	1516
MreI	CGCCGGCG	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	7 cut(s)	1080, 1388, 1626, 1914, 2051, 2870, 2891
MslI	CAYNNNNRTG	5 cut(s)	974, 1628, 2801, 3127, 3168
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	2 cut(s)	645, 2044
MspCI	CTTAAG	1 cut(s)	2869
MspI	CCGG	8 cut(s)	22, 56, 336, 341, 440, 508, 2640, 3259
MspR9I	CCNGG	9 cut(s)	22, 441, 974, 1297, 1349, 1835, 2498, 2544, 2641
MunI	CAATTG	4 cut(s)	278, 832, 1764, 2094
Mva1269I	GAATGC	3 cut(s)	648, 900, 2902
MvaI	CCWGG	6 cut(s)	974, 1297, 1349, 1835, 2498, 2544
MvnI	CGCG	3 cut(s)	89, 174, 645
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	3 cut(s)	22, 441, 2641
NcoI	CCATGG	1 cut(s)	2917
NdeI	CATATG	3 cut(s)	703, 1714, 2740
NgoMIV	GCCGGC	1 cut(s)	55
NlaIV	GGNNCC	7 cut(s)	221, 891, 1294, 1723, 2010, 2767, 2793
NmeAIII	GCCGAG	1 cut(s)	2171
NmuCI	GTSAC	3 cut(s)	1312, 2604, 3088
NsiI	ATGCAT	1 cut(s)	1516
NspV	TTCGAA	1 cut(s)	881
PaeR7I	CTCGAG	4 cut(s)	146, 1575, 2348, 2807
PagI	TCATGA	4 cut(s)	696, 735, 1029, 1803
PceI	AGGCCT	1 cut(s)	521
PciSI	GCTCTTC	2 cut(s)	683, 732
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 129
PctI	GAATGC	3 cut(s)	648, 900, 2902
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	408, 587, 1006, 2243
PflMI	CCANNNNNTGG	2 cut(s)	1229, 2723
PfoI	TCCNGGA	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	3258
PleI	GAGTC	2 cut(s)	1027, 3106
PpsI	GAGTC	2 cut(s)	1027, 3106
PpuMI	RGGWCCY	1 cut(s)	2791
PsiI	TTATAA	1 cut(s)	1815
Psp5II	RGGWCCY	1 cut(s)	2791
Psp6I	CCWGG	6 cut(s)	972, 1295, 1347, 1833, 2496, 2542
PspFI	CCCAGC	1 cut(s)	1694
PspGI	CCWGG	6 cut(s)	972, 1295, 1347, 1833, 2496, 2542
PspN4I	GGNNCC	7 cut(s)	221, 891, 1294, 1723, 2010, 2767, 2793
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	7 cut(s)	219, 220, 333, 338, 634, 1837, 2791
PspPPI	RGGWCCY	1 cut(s)	2791
PspXI	VCTCGAGB	2 cut(s)	1575, 2348
PsuI	RGATCY	3 cut(s)	1138, 2008, 2933
PvuII	CAGCTG	1 cut(s)	2044
RsaI	GTAC	6 cut(s)	554, 1831, 2466, 2736, 3077, 3181
RsaNI	GTAC	6 cut(s)	553, 1830, 2465, 2735, 3076, 3180
RseI	CAYNNNNRTG	5 cut(s)	974, 1628, 2801, 3127, 3168
Rsr2I	CGGWCCG	1 cut(s)	338
RsrII	CGGWCCG	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	646
SalI	GTCGAC	1 cut(s)	2037
SapI	GCTCTTC	2 cut(s)	683, 732
SaqAI	TTAA	7 cut(s)	1080, 1388, 1626, 1914, 2051, 2870, 2891
Sau96I	GGNCC	7 cut(s)	219, 220, 333, 338, 634, 1837, 2791
SchI	GAGTC	2 cut(s)	1027, 3106
ScrFI	CCNGG	9 cut(s)	22, 441, 974, 1297, 1349, 1835, 2498, 2544, 2641
SduI	GDGCHC	5 cut(s)	223, 417, 2808, 3047, 3177
SexAI	ACCWGGT	1 cut(s)	2496
SfaNI	GCATC	5 cut(s)	216, 940, 1245, 1501, 2692
SfcI	CTRYAG	2 cut(s)	1053, 2823
Sfr274I	CTCGAG	4 cut(s)	146, 1575, 2348, 2807
Sfr303I	CCGCGG	1 cut(s)	646
SfuI	TTCGAA	1 cut(s)	881
SgrAI	CRCCGGYG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	646
SinI	GGWCC	4 cut(s)	333, 338, 1837, 2791
SlaI	CTCGAG	4 cut(s)	146, 1575, 2348, 2807
SmiMI	CAYNNNNRTG	5 cut(s)	974, 1628, 2801, 3127, 3168
SmlI	CTYRAG	8 cut(s)	146, 482, 1037, 1575, 2015, 2348, 2807, 2869
SmoI	CTYRAG	8 cut(s)	146, 482, 1037, 1575, 2015, 2348, 2807, 2869
SseBI	AGGCCT	1 cut(s)	521
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	2 cut(s)	1479, 2030
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	9 cut(s)	20, 439, 972, 1295, 1347, 1833, 2496, 2542, 2639
StyI	CCWWGG	3 cut(s)	2769, 2917, 3001
TaaI	ACNGT	9 cut(s)	1729, 2036, 2275, 2464, 2722, 2963, 3075, 3088, 3138
TaiI	ACGT	2 cut(s)	126, 3127
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	3 cut(s)	552, 3075, 3179
TfiI	GAWTC	4 cut(s)	408, 587, 1006, 2243
Tru1I	TTAA	7 cut(s)	1080, 1388, 1626, 1914, 2051, 2870, 2891
Tru9I	TTAA	7 cut(s)	1080, 1388, 1626, 1914, 2051, 2870, 2891
TscAI	CASTG	7 cut(s)	1732, 2031, 2326, 2716, 2968, 3056, 3143
TseFI	GTSAC	3 cut(s)	1312, 2604, 3088
Tsp45I	GTSAC	3 cut(s)	1312, 2604, 3088
TspGWI	ACGGA	4 cut(s)	420, 1112, 2059, 2482
TspRI	CASTG	7 cut(s)	1732, 2031, 2326, 2716, 2968, 3056, 3143
Van91I	CCANNNNNTGG	2 cut(s)	1229, 2723
Vha464I	CTTAAG	1 cut(s)	2869
VpaK11BI	GGWCC	4 cut(s)	333, 338, 1837, 2791
XapI	RAATTY	9 cut(s)	107, 875, 1166, 1217, 1390, 1935, 1947, 2065, 2874
XhoI	CTCGAG	4 cut(s)	146, 1575, 2348, 2807
XmiI	GTMKAC	1 cut(s)	2038
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	2 cut(s)	1479, 2030
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	1516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.