Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081762.1

Orthogroup ID

OG0007117

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 447

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081762.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

atgatggcttataatctatgctattgcaccctggtccgatctgaagatgtacgcaaactcaaccttcctccagaatgtgtgaacaaaactccatctggagaaacatttgttaaaccgaatttgcaaaagggaattcttcctgaaattcttgaagaactaatagctgctcggaagagagcaaaagcggatttgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008408 GO:0009058 GO:0009059 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 zf-C4pol

Protein Analysis

65

Amino Acids

7.36

Weight (kDa)

8.91

Isoelectric Point (pI)

71.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63960 AT5G63960
fragaria_vesca	FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660
malus_domestica	MD00G1053300.v1.1 MD05G1053800.v1.1 MD07G1029900.v1.1
prunus_persica	Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1
pyrus_communis	pycom01g00060 pycom07g02190
rosa_chinensis	RchiOBHm_Chr2g0122111
rosa_laevigata	RLG00000018650
rosa_multiflora	Rmu_co8081762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122010
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh2AG293000 Rh2BG303400 Rh2CG281900 Rh2DG317000
rosa_wichuraiana	Rw2G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	3 cut(s)	118, 132, 144
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	152, 193
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	118, 132, 144
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	54, 117
BsaJI	CCNNGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	50
CviJI	RGCY	2 cut(s)	8, 164
CviKI_1	RGCY	2 cut(s)	8, 164
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	30
FaiI	YATR	2 cut(s)	12, 19
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	2 cut(s)	54, 117
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	38, 43, 171
Hpy188III	TCNNGA	4 cut(s)	71, 96, 140, 149
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	27, 124
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	5 cut(s)	17, 44, 81, 84, 153
Lsp1109I	GCAGC	1 cut(s)	151
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	4 cut(s)	56, 128, 164, 184
MluCI	AATT	3 cut(s)	118, 132, 144
MnlI	CCTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	2 cut(s)	66, 166
SgeI	CNNG	7 cut(s)	43, 44, 83, 108, 152, 161, 180
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	118, 132, 144
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	30
TasI	AATT	3 cut(s)	118, 132, 144
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	118, 132, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.